Variant report

Variant	rs73143014
Chromosome Location	chr3:115989027-115989028
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12492442	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12495309	0.81[AFR][1000 genomes];0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs16845196	0.84[AFR][1000 genomes];0.92[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73140978	0.85[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs73140979	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs73140982	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877360	chr3:115916171-116023990	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv3957	chr3:115986950-116032625	Enhancers Weak transcription Flanking Active TSS Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:115984600-115989800	Weak transcription	Brain Substantia Nigra	brain
2	chr3:115985200-115994600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
3	chr3:115985400-115989200	Weak transcription	Fetal Lung	lung
4	chr3:115985400-115989400	Weak transcription	HUES6 Cell Line	embryonic stem cell
5	chr3:115985400-115992200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr3:115985400-115999600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:115987000-115989400	Enhancers	Brain Anterior Caudate	brain
8	chr3:115987200-115995400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr3:115987400-115990200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr3:115987400-116006200	Weak transcription	Brain Angular Gyrus	brain
11	chr3:115988000-115995600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:115988000-115998200	Weak transcription	Brain Hippocampus Middle	brain
13	chr3:115988200-115996600	Weak transcription	Colon Smooth Muscle	Colon
14	chr3:115988600-115991400	Weak transcription	Pancreatic Islets	Pancreatic Islet
15	chr3:115988800-115989600	Enhancers	HUVEC	blood vessel
16	chr3:115989000-115989200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr3:115989000-115989400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:115989000-115990000	Enhancers	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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