Variant report

Variant	rs73145084
Chromosome Location	chr5:93880740-93880741
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10056742	0.98[AFR][1000 genomes]
rs10065592	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12332301	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs12332334	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs17083799	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2044909	0.89[AFR][1000 genomes]
rs28404931	0.83[AFR][1000 genomes]
rs2881466	0.87[EUR][1000 genomes]
rs55716495	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs58341727	0.91[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs6556847	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs73145042	0.83[AFR][1000 genomes]
rs73145044	0.83[AFR][1000 genomes]
rs73145077	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1023191	chr5:93351646-93947928	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv537808	chr5:93351646-93947928	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
3	nsv1023421	chr5:93679661-93911066	Flanking Active TSS Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Active TSS Weak transcription Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases
4	esv2758002	chr5:93765205-94042201	Enhancers Weak transcription ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv2759354	chr5:93765205-94042201	Active TSS ZNF genes & repeats Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
6	nsv534495	chr5:93789736-93962131	Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
7	nsv598952	chr5:93823951-93956986	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:93855400-93886400	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr5:93856200-93882600	Weak transcription	Ovary	ovary
3	chr5:93872800-93881600	Weak transcription	Pancreas	Pancrea
4	chr5:93878600-93885800	Weak transcription	Fetal Lung	lung
5	chr5:93878800-93882600	Enhancers	Primary monocytes fromperipheralblood	blood
6	chr5:93879200-93882600	Enhancers	Primary hematopoietic stem cells	blood
7	chr5:93879400-93881200	Enhancers	Brain Hippocampus Middle	brain
8	chr5:93879400-93881600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
9	chr5:93879400-93881600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr5:93879400-93882800	Enhancers	Primary neutrophils fromperipheralblood	blood
11	chr5:93879800-93880800	Enhancers	Fetal Heart	heart
12	chr5:93879800-93881200	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr5:93879800-93882000	Enhancers	Primary hematopoietic stem cells short term culture	blood
14	chr5:93880000-93881000	Enhancers	Duodenum Mucosa	Duodenum
15	chr5:93880000-93881200	Enhancers	Right Ventricle	heart
16	chr5:93880200-93881200	Enhancers	Brain Cingulate Gyrus	brain
17	chr5:93880400-93881000	Flanking Active TSS	Brain Substantia Nigra	brain
18	chr5:93880400-93882400	Enhancers	Monocytes-CD14+_RO01746	blood
19	chr5:93880600-93881000	Flanking Active TSS	Brain Anterior Caudate	brain
20	chr5:93880600-93881000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
21	chr5:93880600-93881000	Enhancers	Psoas Muscle	Psoas
22	chr5:93880600-93881200	Enhancers	Left Ventricle	heart
23	chr5:93880600-93881600	Enhancers	Spleen	Spleen
24	chr5:93880600-93881800	Enhancers	Fetal Muscle Trunk	muscle
25	chr5:93880600-93881800	Enhancers	Fetal Muscle Leg	muscle

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