Variant report

Variant	rs73145804
Chromosome Location	chr3:17360248-17360249
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58611463	0.94[AFR][1000 genomes]
rs73143775	0.89[AFR][1000 genomes]
rs73143783	0.94[AFR][1000 genomes]
rs73143800	0.90[AFR][1000 genomes]
rs73145817	0.94[AFR][1000 genomes]
rs73145851	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17255200-17363800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:17298800-17373000	Weak transcription	Rectal Mucosa Donor 31	rectum
3	chr3:17330800-17381400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:17333000-17360400	Weak transcription	GM12878-XiMat	blood
5	chr3:17333400-17363400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr3:17333400-17372000	Weak transcription	Liver	Liver
7	chr3:17333400-17376000	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:17339400-17442200	Weak transcription	Fetal Intestine Small	intestine
9	chr3:17340600-17362600	Weak transcription	Primary hematopoietic stem cells	blood
10	chr3:17342600-17364400	Weak transcription	Primary T cells fromperipheralblood	blood
11	chr3:17343200-17363600	Weak transcription	Primary T cells from cord blood	blood
12	chr3:17343400-17363200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr3:17344400-17439000	Weak transcription	Aorta	Aorta
14	chr3:17345800-17364000	Weak transcription	Brain Substantia Nigra	brain
15	chr3:17347800-17364000	Weak transcription	Primary B cells from cord blood	blood
16	chr3:17349400-17364400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr3:17349600-17364000	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr3:17352000-17377600	Weak transcription	Dnd41	blood
19	chr3:17352200-17370800	Weak transcription	Fetal Lung	lung
20	chr3:17354800-17381600	Weak transcription	Ovary	ovary
21	chr3:17356200-17412800	Weak transcription	Left Ventricle	heart
22	chr3:17356400-17360600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr3:17356800-17390000	Weak transcription	Fetal Muscle Trunk	muscle
24	chr3:17357800-17360600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:17358000-17377600	Weak transcription	Adipose Nuclei	Adipose
26	chr3:17358200-17361600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
27	chr3:17358400-17360600	Weak transcription	HUES48 Cell Line	embryonic stem cell
28	chr3:17359400-17361800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
29	chr3:17359800-17363200	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
30	chr3:17360000-17362000	Strong transcription	Primary B cells from peripheral blood	blood

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