Variant report

Variant	rs73146877
Chromosome Location	chr5:92500406-92500407
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs58235673	0.95[AFR][1000 genomes]
rs60715197	0.95[AFR][1000 genomes]
rs73129305	1.00[AFR][1000 genomes]
rs73129314	0.95[AFR][1000 genomes]
rs73129321	0.95[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1029175	chr5:92436038-92548473	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:92496400-92500800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr5:92496400-92500800	Enhancers	HMEC	breast
3	chr5:92496600-92500600	Enhancers	Placenta Amnion	Placenta Amnion
4	chr5:92496600-92500800	Enhancers	NHLF	lung
5	chr5:92498600-92500600	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr5:92498600-92500600	Enhancers	NHDF-Ad	bronchial
7	chr5:92498600-92501400	Enhancers	Muscle Satellite Cultured Cells	--
8	chr5:92498800-92500800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr5:92499000-92500800	Enhancers	NH-A	brain
10	chr5:92499000-92501600	Enhancers	NHEK	skin
11	chr5:92499400-92500600	Weak transcription	HSMMtube	muscle
12	chr5:92499400-92501400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr5:92499400-92501400	Enhancers	HUVEC	blood vessel
14	chr5:92499400-92501800	Weak transcription	Cortex derived primary cultured neurospheres	brain
15	chr5:92499800-92500800	Enhancers	HSMM	muscle
16	chr5:92500000-92500800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr5:92500000-92500800	Enhancers	Osteobl	bone
18	chr5:92500400-92500600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr5:92500400-92500600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr5:92500400-92500600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr5:92500400-92500600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr5:92500400-92500600	Enhancers	Brain Cingulate Gyrus	brain
23	chr5:92500400-92500600	Enhancers	Colon Smooth Muscle	Colon
24	chr5:92500400-92500600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr5:92500400-92500600	Enhancers	Fetal Muscle Leg	muscle
26	chr5:92500400-92500600	Enhancers	Fetal Stomach	stomach
27	chr5:92500400-92500600	Enhancers	Stomach Smooth Muscle	stomach
28	chr5:92500400-92500600	Enhancers	A549	lung
29	chr5:92500400-92500800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
30	chr5:92500400-92500800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr5:92500400-92500800	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr5:92500400-92500800	Enhancers	Adipose Nuclei	Adipose
33	chr5:92500400-92500800	Enhancers	Rectal Smooth Muscle	rectum
34	chr5:92500400-92500800	Enhancers	Hela-S3	cervix

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