Variant report

Variant	rs73147378
Chromosome Location	chr4:54109902-54109903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10517291	0.83[ASN][1000 genomes]
rs10517292	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11929903	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11939189	0.81[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11947322	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11947928	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12108246	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs12499731	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12500564	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12505661	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12507228	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12512748	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12640471	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs12646150	0.80[AMR][1000 genomes]
rs12647441	0.80[AMR][1000 genomes]
rs17082504	0.92[AMR][1000 genomes];0.88[ASN][1000 genomes]
rs17082529	0.83[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs17082549	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17082565	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17082581	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs34019927	0.88[AMR][1000 genomes]
rs35784764	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4299650	0.92[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs4385131	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs4419530	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4421047	0.92[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4515221	0.83[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs4529117	0.92[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs4864451	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4864452	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4864453	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4864454	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4864747	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4864753	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6826467	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6830879	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6854446	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72498838	0.85[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs73147396	0.90[AMR][1000 genomes];0.87[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73149212	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs751265	0.84[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs7664488	0.81[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs7687029	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7688646	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9762074	0.93[AMR][1000 genomes];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv997614	chr4:54086727-54150632	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv879013	chr4:54093717-54137228	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:54093800-54110800	Weak transcription	Primary B cells from cord blood	blood
2	chr4:54100200-54111600	Weak transcription	Primary hematopoietic stem cells	blood
3	chr4:54101600-54129400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr4:54106600-54120000	Weak transcription	Gastric	stomach
5	chr4:54108000-54111200	Weak transcription	Primary T cells from cord blood	blood
6	chr4:54108000-54114000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr4:54108200-54114200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr4:54108400-54114200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr4:54108400-54114200	Weak transcription	Pancreas	Pancrea
10	chr4:54108400-54129600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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