Variant report

Variant	rs73147628
Chromosome Location	chr7:98731687-98731688
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:98730089..98736251-chr7:98737057..98742639,7	MCF-7	breast:
2	chr7:98725085..98728334-chr7:98729871..98732024,4	K562	blood:
3	chr7:98720831..98724792-chr7:98728821..98732987,4	K562	blood:
4	chr7:98727568..98729680-chr7:98731019..98733192,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000198742	Chromatin interaction

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10248890	0.98[EUR][1000 genomes]
rs10254104	0.91[EUR][1000 genomes]
rs10266364	0.93[EUR][1000 genomes]
rs11764542	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1918019	0.93[EUR][1000 genomes]
rs1918020	0.98[EUR][1000 genomes]
rs1918021	0.98[EUR][1000 genomes]
rs2395022	0.98[EUR][1000 genomes]
rs2395048	0.93[EUR][1000 genomes]
rs2395049	0.88[EUR][1000 genomes]
rs2395050	0.93[EUR][1000 genomes]
rs2395051	0.91[EUR][1000 genomes]
rs2894224	0.89[EUR][1000 genomes]
rs4454228	0.98[EUR][1000 genomes]
rs60083526	1.00[EUR][1000 genomes]
rs62473047	0.91[EUR][1000 genomes]
rs6465739	0.93[EUR][1000 genomes]
rs6956645	0.93[EUR][1000 genomes]
rs6961749	0.89[EUR][1000 genomes]
rs6962075	0.98[EUR][1000 genomes]
rs6969313	0.98[EUR][1000 genomes]
rs6975245	0.98[EUR][1000 genomes]
rs73147614	0.92[AFR][1000 genomes];0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73147619	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147622	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147625	0.88[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147630	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147632	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73147639	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73147651	0.83[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs73147652	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs73147654	0.88[EUR][1000 genomes]
rs73147655	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7788750	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024529	chr7:98194830-98793518	Strong transcription Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv539036	chr7:98194830-98793518	Bivalent/Poised TSS Weak transcription Enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	esv2755119	chr7:98721885-98800145	Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:101 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:98707200-98739400	Weak transcription	Thymus	Thymus
2	chr7:98710000-98739200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr7:98714800-98739400	Weak transcription	Fetal Muscle Trunk	muscle
4	chr7:98718200-98736400	Weak transcription	Dnd41	blood
5	chr7:98718800-98734800	Weak transcription	Fetal Brain Female	brain
6	chr7:98721800-98735000	Weak transcription	HSMMtube	muscle
7	chr7:98721800-98735400	Enhancers	Stomach Mucosa	stomach
8	chr7:98722000-98739600	Weak transcription	Primary B cells from cord blood	blood
9	chr7:98722200-98738600	Weak transcription	Fetal Intestine Small	intestine
10	chr7:98722400-98733000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr7:98722400-98739400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
12	chr7:98722600-98734800	Weak transcription	Fetal Heart	heart
13	chr7:98723400-98735800	Weak transcription	Hela-S3	cervix
14	chr7:98723600-98735000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr7:98723600-98738600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
16	chr7:98723800-98738600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr7:98725000-98731800	Weak transcription	HUES64 Cell Line	embryonic stem cell
18	chr7:98725000-98731800	Weak transcription	Fetal Lung	lung
19	chr7:98725000-98734800	Weak transcription	H1 Cell Line	embryonic stem cell
20	chr7:98725000-98735000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
21	chr7:98725000-98739600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr7:98726600-98734800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr7:98726800-98734400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr7:98727600-98733600	Weak transcription	NHDF-Ad	bronchial
25	chr7:98728000-98733000	Enhancers	Fetal Adrenal Gland	Adrenal Gland
26	chr7:98728200-98733400	Enhancers	Breast Myoepithelial Primary Cells	Breast
27	chr7:98728400-98732000	Enhancers	Small Intestine	intestine
28	chr7:98728800-98734400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr7:98729200-98732000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
30	chr7:98729200-98732000	Enhancers	Brain Anterior Caudate	brain
31	chr7:98729600-98731800	Enhancers	Colon Smooth Muscle	Colon
32	chr7:98729600-98734800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
33	chr7:98729800-98732200	Enhancers	Sigmoid Colon	Sigmoid Colon
34	chr7:98729800-98734800	Enhancers	NHLF	lung
35	chr7:98730000-98733200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr7:98730000-98734600	Weak transcription	Brain Germinal Matrix	brain
37	chr7:98730000-98735000	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr7:98730200-98731800	Enhancers	Osteobl	bone
39	chr7:98730200-98734000	Enhancers	Liver	Liver
40	chr7:98730200-98734400	Weak transcription	Skeletal Muscle Male	skeletal muscle
41	chr7:98730200-98734800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
42	chr7:98730200-98734800	Weak transcription	HUES48 Cell Line	embryonic stem cell
43	chr7:98730400-98732200	Flanking Active TSS	NHEK	skin
44	chr7:98730400-98732800	Enhancers	Primary T helper naive cells from peripheral blood	blood
45	chr7:98730400-98733000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr7:98730400-98734400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr7:98730600-98731800	Enhancers	Primary T helper cells fromperipheralblood	blood
48	chr7:98730600-98731800	Enhancers	NH-A	brain
49	chr7:98730600-98732000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
50	chr7:98730600-98733600	Weak transcription	Brain Cingulate Gyrus	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links