Variant report

Variant	rs73148328
Chromosome Location	chr3:24311655-24311656
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:24308640..24310849-chr3:24311608..24314563,2	MCF-7	breast:
2	chr3:24310060..24312090-chr3:24531891..24534333,2	MCF-7	breast:
3	chr3:24310446..24312352-chr3:24315902..24317669,2	MCF-7	breast:
4	chr3:24310959..24313922-chr3:24535459..24537992,2	MCF-7	breast:
5	chr3:24311445..24313082-chr3:24536182..24537899,2	K562	blood:
6	chr3:24310466..24314073-chr3:24315479..24317996,3	K562	blood:
7	chr3:24309111..24311960-chr3:24536410..24538505,2	MCF-7	breast:
8	chr3:24306694..24308356-chr3:24311478..24313888,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000151090	Chromatin interaction
ENSG00000228791	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73148326	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533980	chr3:23445901-24311972	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	64 gene(s)	inside rSNPs	diseases
2	nsv876626	chr3:24281488-24327131	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
3	nsv527561	chr3:24285768-24313506	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24297200-24335000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:24302200-24313800	Weak transcription	Stomach Mucosa	stomach
3	chr3:24302600-24312000	Weak transcription	Aorta	Aorta
4	chr3:24305600-24312200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr3:24306600-24314800	Weak transcription	A549	lung
6	chr3:24308400-24311800	Weak transcription	Colon Smooth Muscle	Colon
7	chr3:24310400-24312200	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr3:24310800-24312000	Weak transcription	Fetal Intestine Large	intestine
9	chr3:24310800-24313000	Enhancers	Skeletal Muscle Male	skeletal muscle
10	chr3:24310800-24314800	Enhancers	Fetal Intestine Small	intestine
11	chr3:24311000-24311800	Weak transcription	Liver	Liver
12	chr3:24311000-24335200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr3:24311200-24313000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:24311200-24313000	Enhancers	NHDF-Ad	bronchial
15	chr3:24311400-24312800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:24311600-24311800	Weak transcription	Rectal Smooth Muscle	rectum
17	chr3:24311600-24312200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:24311600-24312200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr3:24311600-24312400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr3:24311600-24312400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin

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