Variant report

Variant	rs731486
Chromosome Location	chr7:151080061-151080062
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:151078147..151081068-chr7:151136680..151139312,2	K562	blood:
2	chr7:151063920..151066757-chr7:151078429..151081026,2	K562	blood:
3	chr7:151077370..151082377-chr7:151091271..151094481,5	K562	blood:
4	chr7:151077730..151080062-chr7:151081666..151085996,4	MCF-7	breast:
5	chr7:151075761..151078225-chr7:151078438..151081089,3	K562	blood:
6	chr7:151079183..151083244-chr7:151083923..151090785,10	K562	blood:
7	chr7:151078562..151081117-chr7:151170071..151171599,2	K562	blood:
8	chr7:151074970..151076723-chr7:151078624..151081046,2	K562	blood:
9	chr7:151076539..151080884-chr7:151119951..151124018,3	K562	blood:
10	chr7:151079568..151081072-chr7:151135901..151138180,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 10 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10952308	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs10952309	0.87[AFR][1000 genomes]
rs12668261	0.86[ASN][1000 genomes]
rs12670537	0.81[ASN][1000 genomes]
rs13234689	0.81[ASN][1000 genomes]
rs2159158	0.91[ASN][1000 genomes]
rs2240629	0.91[ASN][1000 genomes]
rs2302128	0.86[ASN][1000 genomes]
rs7778047	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv889489	chr7:151064872-151115691	Enhancers Weak transcription Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs731486	NUB1	Cis_1M	lymphoblastoid	RTeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:151065800-151080800	Weak transcription	HMEC	breast
2	chr7:151066000-151083200	Weak transcription	Hela-S3	cervix
3	chr7:151074400-151095000	Weak transcription	Fetal Kidney	kidney
4	chr7:151076600-151083600	Weak transcription	Placenta Amnion	Placenta Amnion
5	chr7:151076800-151094800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
6	chr7:151077200-151094200	Weak transcription	Dnd41	blood
7	chr7:151077400-151095000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr7:151079400-151080200	Bivalent Enhancer	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr7:151079400-151082800	Weak transcription	Gastric	stomach
10	chr7:151079400-151089200	Weak transcription	Right Atrium	heart
11	chr7:151079600-151080200	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
12	chr7:151079600-151080200	Bivalent Enhancer	Primary T killer memory cells from peripheral blood	blood
13	chr7:151079800-151080200	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
14	chr7:151080000-151080200	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr7:151080000-151081000	Enhancers	Breast Myoepithelial Primary Cells	Breast
16	chr7:151080000-151081800	Weak transcription	Spleen	Spleen

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links