Variant report

Variant	rs73150300
Chromosome Location	chr3:99424120-99424121
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr3:99423210-99424591	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
COL8A1	TF binding region

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12487173	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs12491153	1.00[AFR][1000 genomes]
rs12493124	1.00[AFR][1000 genomes]
rs1610265	0.91[EUR][1000 genomes]
rs4928143	0.91[EUR][1000 genomes]
rs55881709	1.00[AFR][1000 genomes]
rs56094673	0.91[EUR][1000 genomes]
rs6789694	1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7635633	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877217	chr3:99418950-99496351	Enhancers Genic enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:99394000-99426600	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:99397600-99432000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:99403600-99424800	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:99411400-99439600	Weak transcription	NHEK	skin
5	chr3:99411800-99426000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr3:99419000-99428200	Genic enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr3:99419800-99430400	Weak transcription	Left Ventricle	heart
8	chr3:99420000-99427000	Weak transcription	Right Atrium	heart
9	chr3:99420000-99428800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr3:99420000-99429400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:99420000-99432800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
12	chr3:99420000-99433000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr3:99420600-99430400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:99421000-99427200	Strong transcription	HUVEC	blood vessel
15	chr3:99422200-99426000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
16	chr3:99422400-99425200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr3:99422400-99425800	Weak transcription	NHLF	lung
18	chr3:99422400-99426200	Strong transcription	HSMM	muscle
19	chr3:99422400-99426200	Weak transcription	HSMMtube	muscle
20	chr3:99422600-99424400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
21	chr3:99422600-99424800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:99422600-99426000	Weak transcription	NH-A	brain
23	chr3:99422600-99431200	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:99423400-99432400	Genic enhancers	Osteobl	bone
25	chr3:99423800-99424200	Strong transcription	Muscle Satellite Cultured Cells	--
26	chr3:99423800-99440000	Weak transcription	Adipose Nuclei	Adipose
27	chr3:99424000-99424400	Enhancers	NHDF-Ad	bronchial
28	chr3:99424000-99426000	Weak transcription	Aorta	Aorta

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links