Variant report

Variant	rs7315058
Chromosome Location	chr12:25234122-25234123
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:25232452..25234531-chr12:25239537..25241668,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv469169	chr12:24692383-25357680	Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
2	nsv557775	chr12:24692383-25357680	Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	34 gene(s)	inside rSNPs	diseases
3	nsv932477	chr12:24705151-25346677	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
4	nsv1067577	chr12:24791283-25346677	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
5	nsv529514	chr12:24791283-25346677	Enhancers Weak transcription Strong transcription Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
6	nsv1051319	chr12:24921100-25238936	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
7	nsv1037288	chr12:24941350-25238936	Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
8	nsv541428	chr12:24941350-25238936	Flanking Active TSS Enhancers Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
9	nsv1041218	chr12:24972019-25304356	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
10	esv2757492	chr12:25233781-25252178	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
11	esv2759884	chr12:25233781-25252178	Strong transcription Weak transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:43 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:25209400-25264400	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:25210000-25262800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr12:25212000-25250800	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr12:25214400-25245600	Weak transcription	Ovary	ovary
5	chr12:25214400-25251800	Weak transcription	Fetal Intestine Large	intestine
6	chr12:25215000-25265000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
7	chr12:25218600-25239200	Weak transcription	Fetal Intestine Small	intestine
8	chr12:25221600-25235800	Weak transcription	Liver	Liver
9	chr12:25222400-25236000	Weak transcription	Adipose Nuclei	Adipose
10	chr12:25223000-25238000	Weak transcription	Spleen	Spleen
11	chr12:25223400-25235400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
12	chr12:25224600-25241600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
13	chr12:25225400-25237800	Weak transcription	Lung	lung
14	chr12:25227400-25251000	Weak transcription	Pancreas	Pancrea
15	chr12:25228400-25241200	Weak transcription	Stomach Mucosa	stomach
16	chr12:25228800-25236200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr12:25229000-25237800	Weak transcription	Esophagus	oesophagus
18	chr12:25229000-25253000	Strong transcription	Monocytes-CD14+_RO01746	blood
19	chr12:25229200-25241400	Strong transcription	Primary B cells from peripheral blood	blood
20	chr12:25230000-25264600	Strong transcription	Fetal Thymus	thymus
21	chr12:25230600-25235200	Strong transcription	Primary hematopoietic stem cells short term culture	blood
22	chr12:25230600-25240600	Strong transcription	Primary hematopoietic stem cells	blood
23	chr12:25230600-25240600	Strong transcription	GM12878-XiMat	blood
24	chr12:25231600-25237800	Weak transcription	Brain Substantia Nigra	brain
25	chr12:25231600-25240400	Strong transcription	Thymus	Thymus
26	chr12:25231800-25246000	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr12:25232000-25234200	Strong transcription	Primary T helper naive cells from peripheral blood	blood
28	chr12:25232000-25240600	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr12:25232000-25241200	Strong transcription	Primary T helper cells PMA-I stimulated	--
30	chr12:25232000-25241400	Strong transcription	Primary T helper cells fromperipheralblood	blood
31	chr12:25232000-25241600	Strong transcription	Dnd41	blood
32	chr12:25232000-25247600	Strong transcription	Primary T cells fromperipheralblood	blood
33	chr12:25232200-25235000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
34	chr12:25232200-25235200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
35	chr12:25232200-25241000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
36	chr12:25232200-25263600	Strong transcription	Primary neutrophils fromperipheralblood	blood
37	chr12:25232600-25235400	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr12:25233200-25242200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
39	chr12:25233400-25234800	Weak transcription	Primary T cells from cord blood	blood
40	chr12:25233800-25238400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
41	chr12:25233800-25242200	Strong transcription	Primary B cells from cord blood	blood
42	chr12:25234000-25236200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
43	chr12:25234000-25246800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood

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