Variant report

Variant	rs73151430
Chromosome Location	chr5:98089283-98089284
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs58515112	1.00[AFR][1000 genomes]
rs73151410	1.00[AFR][1000 genomes]
rs73151415	1.00[AFR][1000 genomes]
rs73151432	1.00[AFR][1000 genomes]
rs73151437	1.00[AFR][1000 genomes]
rs73151440	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1032060	chr5:98022226-98093492	Enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Weak transcription Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv537817	chr5:98022226-98093492	Enhancers Weak transcription Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Strong transcription Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98076800-98090600	Weak transcription	Muscle Satellite Cultured Cells	--
2	chr5:98084800-98089800	Weak transcription	Osteobl	bone
3	chr5:98085400-98089800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr5:98085400-98091000	Weak transcription	HSMM	muscle
5	chr5:98088000-98089800	Enhancers	HUES48 Cell Line	embryonic stem cell
6	chr5:98088000-98090000	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr5:98088000-98090200	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr5:98088400-98089400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr5:98088400-98090200	Enhancers	HUES64 Cell Line	embryonic stem cell
10	chr5:98088600-98090000	Enhancers	iPS-15b Cell Line	embryonic stem cell
11	chr5:98088800-98089600	Enhancers	H9 Cell Line	embryonic stem cell
12	chr5:98088800-98089800	Enhancers	iPS-20b Cell Line	embryonic stem cell
13	chr5:98088800-98090400	Enhancers	HUES6 Cell Line	embryonic stem cell
14	chr5:98089000-98089800	Enhancers	H1 Cell Line	embryonic stem cell
15	chr5:98089000-98090200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
16	chr5:98089200-98090200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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