Variant report

Variant	rs73151483
Chromosome Location	chr5:98137553-98137554
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs73151466	1.00[AFR][1000 genomes]
rs73151474	1.00[AFR][1000 genomes]
rs73153536	1.00[AMR][1000 genomes]
rs73153543	1.00[AMR][1000 genomes]
rs73153568	1.00[AMR][1000 genomes]
rs73153570	1.00[AMR][1000 genomes]
rs73153576	1.00[AMR][1000 genomes]
rs73153582	1.00[AMR][1000 genomes]
rs73155405	1.00[AMR][1000 genomes]
rs73155440	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv882414	chr5:98063710-98193164	Strong transcription Weak transcription Active TSS Flanking Active TSS Genic enhancers Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
2	nsv882415	chr5:98134186-98312447	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	36 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98123800-98140600	Weak transcription	Brain Substantia Nigra	brain
2	chr5:98129400-98141200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr5:98130000-98137600	Weak transcription	Adipose Nuclei	Adipose
4	chr5:98130200-98139200	Weak transcription	GM12878-XiMat	blood
5	chr5:98130600-98140200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr5:98130800-98138800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr5:98130800-98138800	Weak transcription	Fetal Stomach	stomach
8	chr5:98130800-98140200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
9	chr5:98131200-98141400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
10	chr5:98131400-98139800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr5:98132000-98139800	Weak transcription	NHEK	skin
12	chr5:98132200-98140200	Weak transcription	Fetal Intestine Small	intestine
13	chr5:98132200-98140400	Weak transcription	Skeletal Muscle Male	skeletal muscle
14	chr5:98132600-98137600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr5:98132600-98139800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr5:98132600-98142200	Weak transcription	NHLF	lung
17	chr5:98132600-98154000	Weak transcription	HSMM	muscle
18	chr5:98133200-98139600	Weak transcription	Fetal Muscle Leg	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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