Variant report

Variant	rs73151620
Chromosome Location	chr4:48096101-48096102
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56672591	0.90[AFR][1000 genomes]
rs60450073	0.88[AFR][1000 genomes]
rs73136278	0.84[AFR][1000 genomes]
rs73136279	0.81[AFR][1000 genomes]
rs73151618	1.00[AFR][1000 genomes]
rs73151623	0.96[AFR][1000 genomes]
rs73151628	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3447039	chr4:47822266-48285222	Flanking Active TSS Enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:48067600-48102400	Strong transcription	Primary T helper cells fromperipheralblood	blood
2	chr4:48070800-48105200	Weak transcription	GM12878-XiMat	blood
3	chr4:48083000-48098000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
4	chr4:48083000-48098200	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
5	chr4:48083400-48098200	Strong transcription	Primary T cells from cord blood	blood
6	chr4:48084400-48098000	Strong transcription	Primary T cells fromperipheralblood	blood
7	chr4:48084600-48101600	Strong transcription	Primary T helper cells PMA-I stimulated	--
8	chr4:48085200-48102400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
9	chr4:48086400-48099000	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr4:48088600-48096600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr4:48088600-48104000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
12	chr4:48088600-48106000	Weak transcription	Fetal Thymus	thymus
13	chr4:48088600-48107800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
14	chr4:48088800-48105200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:48090000-48100800	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
16	chr4:48090800-48098600	Strong transcription	Primary T helper naive cells from peripheral blood	blood
17	chr4:48091600-48101000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
18	chr4:48092400-48098200	Strong transcription	Primary T killer memory cells from peripheral blood	blood
19	chr4:48092600-48097200	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
20	chr4:48092600-48098400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
21	chr4:48092800-48098200	Strong transcription	Primary T helper memory cells from peripheral blood 2	blood
22	chr4:48094000-48096800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
23	chr4:48094800-48096800	Enhancers	HMEC	breast
24	chr4:48094800-48097200	Strong transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr4:48094800-48097200	Enhancers	Hela-S3	cervix
26	chr4:48095000-48097000	Enhancers	NHEK	skin
27	chr4:48095200-48096400	Enhancers	HSMMtube	muscle
28	chr4:48095200-48096800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr4:48095400-48096400	Enhancers	A549	lung
30	chr4:48095400-48097000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
31	chr4:48095400-48097000	Enhancers	HUVEC	blood vessel
32	chr4:48095600-48096800	Enhancers	HUES64 Cell Line	embryonic stem cell
33	chr4:48095800-48096200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
34	chr4:48095800-48096200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
35	chr4:48095800-48096600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
36	chr4:48095800-48096600	Enhancers	Stomach Mucosa	stomach
37	chr4:48095800-48096800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived

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