Variant report

Variant	rs73152040
Chromosome Location	chr5:95937301-95937302
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr5:95194159..95195061-chr5:95937129..95937952,3	K562	blood:
2	chr5:95680160..95681036-chr5:95937146..95938053,5	K562	blood:
3	chr5:95680204..95681599-chr5:95936681..95938160,14	MCF-7	breast:
4	chr5:95194159..95195132-chr5:95937235..95938162,2	MCF-7	breast:
5	chr5:95936365..95939186-chr5:96519046..96521113,3	K562	blood:

Variant related genes	Relation type
ENSG00000251513	Chromatin interaction

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12108788	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12109924	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12110213	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17396628	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17475276	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2085452	0.84[EUR][1000 genomes]
rs55640226	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs55701703	0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55780418	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6859790	0.83[EUR][1000 genomes]
rs6861034	0.80[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73134504	0.83[EUR][1000 genomes]
rs73134509	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73134511	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73134513	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73134518	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs73152030	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs73152054	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152055	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152056	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152058	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152060	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152062	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73152069	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030444	chr5:95353620-95995619	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv537810	chr5:95353620-95995619	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv1024964	chr5:95742124-96065492	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
4	nsv537811	chr5:95742124-96065492	Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	34 gene(s)	inside rSNPs	diseases
5	nsv1026484	chr5:95759910-95961518	Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:95933800-95937400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr5:95933800-95941000	Weak transcription	Osteobl	bone
3	chr5:95936200-95937600	Flanking Active TSS	HUVEC	blood vessel
4	chr5:95936600-95937800	Enhancers	Brain Inferior Temporal Lobe	brain
5	chr5:95936800-95937400	Enhancers	Brain Hippocampus Middle	brain
6	chr5:95936800-95937600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr5:95937000-95937600	Active TSS	Brain Anterior Caudate	brain
8	chr5:95937000-95937600	Enhancers	HMEC	breast
9	chr5:95937200-95937400	Weak transcription	Adipose Nuclei	Adipose
10	chr5:95937200-95937600	Active TSS	Pancreatic Islets	Pancreatic Islet
11	chr5:95937200-95939400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links