Variant report

Variant	rs73152104
Chromosome Location	chr3:24523305-24523306
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:24516699..24519082-chr3:24520454..24523738,3	K562	blood:
2	chr3:24520353..24523433-chr3:24523948..24528616,5	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs58016799	0.88[AFR][1000 genomes]
rs6550874	0.90[AFR][1000 genomes]
rs6550875	0.90[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834641	chr3:24465862-24633738	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
2	nsv834642	chr3:24475558-24640593	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
3	nsv1012975	chr3:24500706-24615644	Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:24499600-24526800	Weak transcription	Rectal Mucosa Donor 31	rectum
2	chr3:24509600-24531000	Weak transcription	Fetal Lung	lung
3	chr3:24515600-24533200	Weak transcription	Stomach Mucosa	stomach
4	chr3:24517800-24523600	Weak transcription	Rectal Smooth Muscle	rectum
5	chr3:24517800-24523800	Weak transcription	Gastric	stomach
6	chr3:24517800-24527000	Weak transcription	Lung	lung
7	chr3:24517800-24527000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:24517800-24527000	Weak transcription	Hela-S3	cervix
9	chr3:24517800-24528600	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr3:24517800-24529000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
11	chr3:24519200-24526800	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:24519400-24525200	Weak transcription	K562	blood
13	chr3:24519400-24525400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr3:24519400-24527400	Weak transcription	Right Atrium	heart
15	chr3:24519400-24532800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr3:24520400-24523600	Weak transcription	HUES64 Cell Line	embryonic stem cell
17	chr3:24520400-24525200	Weak transcription	Primary monocytes fromperipheralblood	blood
18	chr3:24520400-24525400	Weak transcription	H9 Cell Line	embryonic stem cell
19	chr3:24520400-24529800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
20	chr3:24520800-24523400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr3:24521000-24523400	Enhancers	HMEC	breast
22	chr3:24521000-24523800	Enhancers	Breast Myoepithelial Primary Cells	Breast
23	chr3:24521000-24524200	Enhancers	Psoas Muscle	Psoas
24	chr3:24521400-24524400	Enhancers	Colon Smooth Muscle	Colon
25	chr3:24521400-24525600	Enhancers	Skeletal Muscle Male	skeletal muscle
26	chr3:24521400-24527400	Weak transcription	Pancreas	Pancrea
27	chr3:24521800-24525200	Weak transcription	Aorta	Aorta
28	chr3:24522000-24523800	Weak transcription	Left Ventricle	heart
29	chr3:24522000-24525200	Weak transcription	Right Ventricle	heart
30	chr3:24522000-24525400	Enhancers	Fetal Intestine Small	intestine
31	chr3:24522200-24523600	Weak transcription	HepG2	liver
32	chr3:24522400-24525000	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr3:24522400-24525200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr3:24522400-24525200	Weak transcription	Monocytes-CD14+_RO01746	blood
35	chr3:24522600-24523600	Weak transcription	Liver	Liver
36	chr3:24522600-24526600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr3:24522600-24528600	Weak transcription	Adipose Nuclei	Adipose
38	chr3:24522800-24524000	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr3:24522800-24525200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
40	chr3:24523000-24524400	Enhancers	Fetal Intestine Large	intestine
41	chr3:24523000-24534000	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr3:24523200-24524200	Enhancers	Skeletal Muscle Female	skeletal muscle

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