Variant report

Variant	rs73152163
Chromosome Location	chr5:96293676-96293677
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:23)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:23 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF143	chr5:96293544-96294101	GM12878	blood:	n/a	n/a
2	POLR2A	chr5:96293432-96294972	Raji	blood:	n/a	n/a
3	MEF2A	chr5:96293573-96294056	GM12878	blood:	n/a	n/a
4	FOXM1	chr5:96293024-96294225	GM12878	blood:	n/a	n/a
5	RUNX3	chr5:96292858-96294250	GM12878	blood:	n/a	n/a
6	SPI1	chr5:96293609-96293968	GM12891	blood:	n/a	n/a
7	KAP1	chr5:96292853-96293739	HEK293	kidney:	n/a	n/a
8	ATF2	chr5:96292850-96294042	GM12878	blood:	n/a	n/a
9	IKZF1	chr5:96292882-96294409	GM12878	blood:	n/a	n/a
10	EBF1	chr5:96293082-96294022	GM12878	blood:	n/a	n/a
11	BCLAF1	chr5:96292830-96293830	GM12878	blood:	n/a	n/a
12	NFATC1	chr5:96293492-96294512	GM12878	blood:	n/a	n/a
13	WRNIP1	chr5:96293622-96293815	GM12878	blood:	n/a	n/a
14	NFIC	chr5:96292799-96294407	GM12878	blood:	n/a	n/a
15	PML	chr5:96292899-96294557	GM12878	blood:	n/a	n/a
16	BATF	chr5:96293504-96294046	GM12878	blood:	n/a	n/a
17	NFIC	chr5:96292910-96294200	GM12878	blood:	n/a	n/a
18	RUNX3	chr5:96292796-96294109	GM12878	blood:	n/a	n/a
19	FOXM1	chr5:96293566-96294108	GM12878	blood:	n/a	n/a
20	STAT5A	chr5:96292981-96294039	GM12878	blood:	n/a	n/a
21	EBF1	chr5:96293567-96293969	GM12878	blood:	n/a	n/a
22	ATF2	chr5:96292883-96294145	GM12878	blood:	n/a	n/a
23	MTA3	chr5:96292826-96294125	GM12878	blood:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:96268234..96272758-chr5:96290815..96294670,4	K562	blood:
2	chr5:96270050..96274625-chr5:96293478..96297387,4	MCF-7	breast:

No data

Variant related genes	Relation type
LNPEP	TF binding region
ENSG00000113441	Chromatin interaction
ENSG00000247121	Chromatin interaction

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs59959433	0.89[AFR][1000 genomes]
rs60561288	1.00[AMR][1000 genomes]
rs60878093	1.00[AMR][1000 genomes]
rs73135403	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73135418	0.94[AFR][1000 genomes]
rs73135423	0.94[AFR][1000 genomes]
rs73139226	0.89[AFR][1000 genomes]
rs73139235	0.89[AFR][1000 genomes]
rs73139238	0.89[AFR][1000 genomes]
rs73139248	0.89[AFR][1000 genomes]
rs73139255	0.83[AFR][1000 genomes]
rs73150385	1.00[AMR][1000 genomes]
rs73152130	1.00[AMR][1000 genomes]
rs73152143	1.00[AMR][1000 genomes]
rs73152144	1.00[AMR][1000 genomes]
rs73152145	1.00[AMR][1000 genomes]
rs73152146	1.00[AMR][1000 genomes]
rs73152153	1.00[AMR][1000 genomes]
rs73152158	0.83[AMR][1000 genomes]
rs7715183	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv432755	chr5:95987984-96657483	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	66 gene(s)	inside rSNPs	diseases
2	nsv598962	chr5:96057891-96893164	Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv948703	chr5:96078309-96368839	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
4	nsv1027472	chr5:96081592-96337550	Strong transcription Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
5	nsv1028741	chr5:96082401-96372165	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	32 gene(s)	inside rSNPs	diseases
6	nsv949058	chr5:96082433-96390619	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	33 gene(s)	inside rSNPs	diseases
7	nsv598963	chr5:96084776-96363407	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
8	nsv531967	chr5:96127842-96302702	Flanking Active TSS Strong transcription Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:79 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:96273000-96299200	Weak transcription	Aorta	Aorta
2	chr5:96274600-96298400	Weak transcription	HSMM	muscle
3	chr5:96277800-96303800	Weak transcription	Pancreas	Pancrea
4	chr5:96278000-96296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr5:96278200-96314400	Weak transcription	Fetal Intestine Large	intestine
6	chr5:96279800-96298400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
7	chr5:96279800-96303800	Weak transcription	Esophagus	oesophagus
8	chr5:96282200-96303800	Weak transcription	Spleen	Spleen
9	chr5:96283400-96296600	Weak transcription	NHDF-Ad	bronchial
10	chr5:96285400-96296000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr5:96285400-96304400	Weak transcription	Fetal Intestine Small	intestine
12	chr5:96286400-96303800	Weak transcription	Right Ventricle	heart
13	chr5:96288400-96303800	Weak transcription	Fetal Stomach	stomach
14	chr5:96288800-96296200	Weak transcription	Osteobl	bone
15	chr5:96288800-96296800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr5:96289000-96294400	Weak transcription	Left Ventricle	heart
17	chr5:96289000-96297600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr5:96289000-96297800	Weak transcription	Right Atrium	heart
19	chr5:96289000-96298800	Weak transcription	Rectal Mucosa Donor 31	rectum
20	chr5:96289200-96296000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr5:96289800-96297600	Weak transcription	HMEC	breast
22	chr5:96289800-96297800	Weak transcription	Stomach Mucosa	stomach
23	chr5:96290000-96294200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr5:96290000-96297800	Weak transcription	Fetal Kidney	kidney
25	chr5:96290000-96298800	Weak transcription	Fetal Lung	lung
26	chr5:96290200-96298200	Weak transcription	Colon Smooth Muscle	Colon
27	chr5:96290200-96298600	Weak transcription	Rectal Smooth Muscle	rectum
28	chr5:96290600-96295000	Enhancers	Primary T cells fromperipheralblood	blood
29	chr5:96290800-96295000	Enhancers	Primary B cells from peripheral blood	blood
30	chr5:96290800-96295400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
31	chr5:96290800-96296600	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr5:96290800-96298000	Enhancers	Primary T helper naive cells from peripheral blood	blood
33	chr5:96291200-96295000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
34	chr5:96291200-96297600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
35	chr5:96291400-96294400	Enhancers	Primary hematopoietic stem cells	blood
36	chr5:96291400-96297200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr5:96291600-96294200	Enhancers	Primary T cells from cord blood	blood
38	chr5:96291800-96293800	Flanking Active TSS	GM12878-XiMat	blood
39	chr5:96291800-96297800	Weak transcription	HUVEC	blood vessel
40	chr5:96292200-96294200	Weak transcription	Placenta	Placenta
41	chr5:96292200-96297800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
42	chr5:96292400-96293800	Enhancers	HepG2	liver
43	chr5:96292600-96295000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
44	chr5:96292800-96293800	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
45	chr5:96292800-96294400	Enhancers	Liver	Liver
46	chr5:96292800-96294400	Enhancers	Skeletal Muscle Male	skeletal muscle
47	chr5:96292800-96294600	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
48	chr5:96292800-96295000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
49	chr5:96292800-96299400	Enhancers	Primary neutrophils fromperipheralblood	blood
50	chr5:96292800-96299800	Enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links