Variant report

Variant	rs73153062
Chromosome Location	chr3:17536684-17536685
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs11917279	0.84[AFR][1000 genomes]
rs11925079	0.84[AFR][1000 genomes]
rs57167178	0.84[AFR][1000 genomes]
rs59007406	0.84[AFR][1000 genomes]
rs60535468	0.84[AFR][1000 genomes]
rs73153022	0.84[AFR][1000 genomes]
rs73155232	0.84[AFR][1000 genomes]
rs73161449	0.84[AFR][1000 genomes]
rs73161460	0.84[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876590	chr3:17230884-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv2755406	chr3:17237396-17589896	Enhancers Flanking Active TSS Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv876591	chr3:17246392-17671992	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv869378	chr3:17338236-17576692	Weak transcription Enhancers Active TSS Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv915606	chr3:17357042-17668263	Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv999568	chr3:17360261-17594750	Enhancers Strong transcription Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
7	nsv999460	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
8	nsv536510	chr3:17360261-17720103	Enhancers Weak transcription Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
9	nsv428080	chr3:17367870-17539943	Enhancers ZNF genes & repeats Strong transcription Weak transcription Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv876592	chr3:17369313-17604963	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	esv2755442	chr3:17372796-17589896	Genic enhancers Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
12	nsv589842	chr3:17381380-17538921	Strong transcription Weak transcription Flanking Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
13	nsv470439	chr3:17394615-17538921	Strong transcription Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	nsv876593	chr3:17419843-17604963	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv3715	chr3:17514325-17578178	Enhancers ZNF genes & repeats Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
16	esv1818359	chr3:17529948-17544013	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers Flanking Active TSS	n/a	n/a	inside rSNPs	diseases
17	nsv442855	chr3:17529948-17544013	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:17512000-17538000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
2	chr3:17516600-17537600	Weak transcription	Colon Smooth Muscle	Colon
3	chr3:17520200-17537000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
4	chr3:17522600-17537200	Weak transcription	Fetal Kidney	kidney
5	chr3:17522800-17541400	Weak transcription	Ovary	ovary
6	chr3:17523000-17541400	Weak transcription	Pancreas	Pancrea
7	chr3:17523000-17570000	Weak transcription	Spleen	Spleen
8	chr3:17523200-17556200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr3:17530000-17537400	Weak transcription	Primary neutrophils fromperipheralblood	blood
10	chr3:17530600-17538000	Weak transcription	Rectal Mucosa Donor 29	rectum
11	chr3:17530600-17587600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr3:17532000-17542000	Weak transcription	A549	lung
13	chr3:17532600-17543800	Weak transcription	Liver	Liver
14	chr3:17533200-17550600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr3:17533400-17549800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
16	chr3:17533600-17547200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:17534000-17546800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr3:17534000-17559800	Weak transcription	Duodenum Smooth Muscle	Duodenum
19	chr3:17534200-17561600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr3:17535000-17538800	Weak transcription	Duodenum Mucosa	Duodenum
21	chr3:17535200-17536800	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr3:17535400-17536800	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
23	chr3:17535600-17536800	ZNF genes & repeats	Fetal Intestine Small	intestine
24	chr3:17535600-17552000	Weak transcription	Primary T cells from cord blood	blood
25	chr3:17536000-17536800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
26	chr3:17536000-17549800	Weak transcription	Fetal Lung	lung
27	chr3:17536200-17538000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
28	chr3:17536200-17555600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr3:17536400-17537200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr3:17536400-17537400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr3:17536400-17543400	Weak transcription	Primary hematopoietic stem cells	blood
32	chr3:17536400-17559800	Weak transcription	Adipose Nuclei	Adipose
33	chr3:17536400-17562600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
34	chr3:17536400-17568800	Weak transcription	GM12878-XiMat	blood
35	chr3:17536400-17574800	Weak transcription	Dnd41	blood
36	chr3:17536600-17536800	Weak transcription	Lung	lung
37	chr3:17536600-17537800	Weak transcription	Primary B cells from cord blood	blood
38	chr3:17536600-17537800	Weak transcription	Aorta	Aorta
39	chr3:17536600-17541000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
40	chr3:17536600-17544000	Weak transcription	Primary B cells from peripheral blood	blood
41	chr3:17536600-17544200	Weak transcription	Right Ventricle	heart
42	chr3:17536600-17547600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr3:17536600-17559600	Weak transcription	Fetal Stomach	stomach
44	chr3:17536600-17560400	Weak transcription	Fetal Intestine Large	intestine
45	chr3:17536600-17561600	Weak transcription	Fetal Muscle Trunk	muscle
46	chr3:17536600-17562200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr3:17536600-17588000	Weak transcription	Left Ventricle	heart

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