Variant report

Variant	rs73154374
Chromosome Location	chr22:33037748-33037749
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs16990857	0.84[ASN][1000 genomes]
rs16990872	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3827336	0.94[ASN][1000 genomes]
rs58208983	0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58228617	0.84[ASN][1000 genomes]
rs58291507	0.84[ASN][1000 genomes]
rs58410126	0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs67485432	0.80[ASN][1000 genomes]
rs73154363	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73154365	0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9609608	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9621513	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1055541	chr22:33006967-33101138	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	esv2762119	chr22:33006967-33101150	Enhancers Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv1061824	chr22:33013014-33101138	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv459875	chr22:33025180-33097662	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
5	nsv588896	chr22:33025180-33097662	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
6	nsv1064719	chr22:33028891-33159636	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33029000-33039200	Weak transcription	Fetal Muscle Trunk	muscle
2	chr22:33031000-33040000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr22:33033600-33039200	Weak transcription	Fetal Thymus	thymus
4	chr22:33034000-33039200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
5	chr22:33036600-33040200	Weak transcription	Fetal Stomach	stomach
6	chr22:33037000-33039200	Weak transcription	Spleen	Spleen
7	chr22:33037200-33040200	Weak transcription	Adipose Nuclei	Adipose

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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