Variant report

Variant	rs73154406
Chromosome Location	chr13:30057788-30057789
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs2388076	1.00[EUR][1000 genomes]
rs41291229	1.00[EUR][1000 genomes]
rs73154407	1.00[EUR][1000 genomes]
rs73154410	1.00[EUR][1000 genomes]
rs73154411	1.00[EUR][1000 genomes]
rs73154413	1.00[EUR][1000 genomes]
rs73154415	1.00[EUR][1000 genomes]
rs73154416	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73154417	0.89[EUR][1000 genomes]
rs7330699	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv427927	chr13:29729315-30062054	Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv983696	chr13:30034016-30090454	Enhancers Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30047200-30081000	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr13:30054400-30058200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr13:30054600-30058000	Weak transcription	Aorta	Aorta
4	chr13:30055400-30059000	Weak transcription	Dnd41	blood
5	chr13:30055600-30057800	Weak transcription	Cortex derived primary cultured neurospheres	brain
6	chr13:30055600-30070200	Weak transcription	Ovary	ovary
7	chr13:30056200-30057800	Enhancers	Fetal Intestine Small	intestine
8	chr13:30056800-30059800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr13:30057000-30058200	Enhancers	Right Ventricle	heart
10	chr13:30057000-30058400	Enhancers	Fetal Muscle Leg	muscle
11	chr13:30057000-30058400	Enhancers	Fetal Stomach	stomach
12	chr13:30057200-30058000	Genic enhancers	Fetal Muscle Trunk	muscle
13	chr13:30057200-30058400	Enhancers	Left Ventricle	heart
14	chr13:30057200-30058400	Enhancers	Right Atrium	heart
15	chr13:30057200-30059200	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr13:30057400-30058200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:30057400-30059000	Enhancers	H1 Cell Line	embryonic stem cell
18	chr13:30057400-30059000	Enhancers	HUES6 Cell Line	embryonic stem cell
19	chr13:30057400-30059200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr13:30057400-30059200	Enhancers	Primary B cells from peripheral blood	blood
21	chr13:30057400-30059400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr13:30057400-30062000	Weak transcription	Stomach Smooth Muscle	stomach
23	chr13:30057400-30070200	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr13:30057600-30058200	Flanking Active TSS	Fetal Heart	heart

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links