Variant report

Variant	rs73154647
Chromosome Location	chr22:31179135-31179136
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs9609079	0.83[ASN][1000 genomes]
rs9609088	0.83[ASN][1000 genomes]
rs9609089	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915818	chr22:30708245-31346302	Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	82 gene(s)	inside rSNPs	diseases
2	esv2763260	chr22:31141521-31185000	Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31140000-31185400	Weak transcription	Fetal Brain Female	brain
2	chr22:31168000-31185400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr22:31172800-31189400	Weak transcription	Fetal Heart	heart
4	chr22:31173800-31181600	Weak transcription	Spleen	Spleen
5	chr22:31173800-31198200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr22:31174600-31179800	Weak transcription	Fetal Intestine Small	intestine
7	chr22:31176000-31180400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
8	chr22:31177200-31179200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr22:31177400-31179200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
10	chr22:31177600-31182800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
11	chr22:31177800-31180200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr22:31177800-31185800	Weak transcription	HSMMtube	muscle
13	chr22:31178400-31180600	Enhancers	A549	lung
14	chr22:31178600-31180000	Enhancers	Placenta	Placenta
15	chr22:31178800-31179200	Enhancers	HMEC	breast
16	chr22:31178800-31187600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
17	chr22:31179000-31179200	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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