Variant report

Variant	rs73155552
Chromosome Location	chr4:56820567-56820568
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:56820475..56822078-chr4:56827472..56830252,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs57886922	1.00[EUR][1000 genomes]
rs58433550	1.00[EUR][1000 genomes]
rs59458672	1.00[EUR][1000 genomes]
rs61112573	1.00[EUR][1000 genomes]
rs61518649	0.87[AFR][1000 genomes]
rs73151561	1.00[EUR][1000 genomes]
rs73151574	1.00[EUR][1000 genomes]
rs73155521	1.00[EUR][1000 genomes]
rs73155527	1.00[EUR][1000 genomes]
rs73155528	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73155546	0.87[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73155551	1.00[EUR][1000 genomes]
rs73155554	1.00[EUR][1000 genomes]
rs73155568	1.00[EUR][1000 genomes]
rs73155569	1.00[EUR][1000 genomes]
rs73155582	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73155583	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs73155593	1.00[EUR][1000 genomes]
rs73155597	1.00[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases
3	nsv1005845	chr4:56522075-56980357	Active TSS Bivalent Enhancer Weak transcription Strong transcription ZNF genes & repeats Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3406311	chr4:56580578-56840877	ZNF genes & repeats Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	26 gene(s)	inside rSNPs	diseases
5	nsv427681	chr4:56651921-56908209	Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:116 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56815800-56839200	Weak transcription	Esophagus	oesophagus
2	chr4:56815800-56875000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr4:56816000-56821000	Weak transcription	Aorta	Aorta
4	chr4:56816000-56821400	Weak transcription	Psoas Muscle	Psoas
5	chr4:56816000-56823200	Weak transcription	Left Ventricle	heart
6	chr4:56816000-56824600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr4:56816000-56833400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr4:56816200-56821000	Weak transcription	Lung	lung
9	chr4:56816200-56821200	Weak transcription	Fetal Muscle Trunk	muscle
10	chr4:56816200-56822800	Weak transcription	Pancreatic Islets	Pancreatic Islet
11	chr4:56816200-56839400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr4:56816200-56846600	Weak transcription	Right Ventricle	heart
13	chr4:56816200-56873400	Weak transcription	Pancreas	Pancrea
14	chr4:56816200-56884200	Weak transcription	Rectal Smooth Muscle	rectum
15	chr4:56816200-56887800	Weak transcription	Gastric	stomach
16	chr4:56816400-56822800	Weak transcription	Fetal Intestine Small	intestine
17	chr4:56816400-56826400	Weak transcription	Brain Anterior Caudate	brain
18	chr4:56816400-56827000	Weak transcription	Brain Cingulate Gyrus	brain
19	chr4:56816400-56866000	Weak transcription	Spleen	Spleen
20	chr4:56816400-56890800	Weak transcription	Colon Smooth Muscle	Colon
21	chr4:56816600-56821400	Weak transcription	Adipose Nuclei	Adipose
22	chr4:56816600-56821400	Weak transcription	Fetal Brain Male	brain
23	chr4:56816600-56821600	Weak transcription	Stomach Smooth Muscle	stomach
24	chr4:56816600-56822800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr4:56816600-56823000	Weak transcription	Sigmoid Colon	Sigmoid Colon
26	chr4:56816600-56823200	Weak transcription	H9 Cell Line	embryonic stem cell
27	chr4:56816600-56823600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr4:56816600-56829800	Weak transcription	Colonic Mucosa	Colon
29	chr4:56816600-56831800	Weak transcription	Fetal Lung	lung
30	chr4:56816600-56834000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
31	chr4:56816600-56851800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr4:56816600-56852000	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr4:56816600-56865800	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr4:56816600-56890600	Weak transcription	Brain Hippocampus Middle	brain
35	chr4:56816600-56896400	Weak transcription	Fetal Heart	heart
36	chr4:56816800-56820800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
37	chr4:56816800-56820800	Weak transcription	Fetal Stomach	stomach
38	chr4:56816800-56821000	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr4:56816800-56821000	Weak transcription	Brain Germinal Matrix	brain
40	chr4:56816800-56821000	Weak transcription	Thymus	Thymus
41	chr4:56816800-56821200	Weak transcription	Rectal Mucosa Donor 29	rectum
42	chr4:56816800-56821400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
43	chr4:56816800-56821400	Weak transcription	Fetal Brain Female	brain
44	chr4:56816800-56831400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
45	chr4:56816800-56865800	Weak transcription	Small Intestine	intestine
46	chr4:56816800-56869800	Weak transcription	HepG2	liver
47	chr4:56817200-56823000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
48	chr4:56817400-56821200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
49	chr4:56817400-56839200	Weak transcription	NHEK	skin
50	chr4:56817400-56885400	Weak transcription	NHDF-Ad	bronchial

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