Variant report

Variant	rs73155690
Chromosome Location	chr4:56422679-56422680
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs17086003	1.00[AMR][1000 genomes]
rs58940536	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs59669272	1.00[AMR][1000 genomes]
rs60542719	1.00[AMR][1000 genomes]
rs60853762	1.00[AMR][1000 genomes]
rs61510143	1.00[AMR][1000 genomes]
rs73148756	1.00[AMR][1000 genomes]
rs73148758	1.00[AMR][1000 genomes]
rs73148767	1.00[AMR][1000 genomes]
rs73149883	1.00[AMR][1000 genomes]
rs73150945	1.00[AMR][1000 genomes]
rs73150972	1.00[AMR][1000 genomes]
rs73152832	1.00[AMR][1000 genomes]
rs73153608	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153636	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153653	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153691	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155667	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155678	1.00[AMR][1000 genomes]
rs73155685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155699	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3328582	chr4:56164136-56486156	Enhancers Active TSS Weak transcription Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	esv2755990	chr4:56317136-57143037	Strong transcription Weak transcription Flanking Bivalent TSS/Enh Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv10496	chr4:56336946-56841137	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	35 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:56416800-56425600	Weak transcription	K562	blood
2	chr4:56418800-56431800	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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