Variant report

Variant	rs73156792
Chromosome Location	chr22:31514557-31514558
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	MAFK	chr22:31514537-31514985	HepG2	liver:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:31513885..31515520-chr22:31517409..31519547,2	MCF-7	breast:

Variant related genes	Relation type
INPP5J	TF binding region
ENSG00000185133	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12485186	0.94[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1990125	1.00[ASN][1000 genomes]
rs2413016	1.00[ASN][1000 genomes]
rs4820933	1.00[ASN][1000 genomes]
rs56017492	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5753446	1.00[ASN][1000 genomes]
rs73156781	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156787	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73156799	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs917208	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829173	chr22:31450043-31543956	Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv914976	chr22:31475307-31543260	Active TSS Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:31504200-31515000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr22:31504200-31515400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr22:31504400-31517800	Weak transcription	Stomach Smooth Muscle	stomach
4	chr22:31504400-31518000	Weak transcription	Rectal Smooth Muscle	rectum
5	chr22:31504600-31518600	Weak transcription	Fetal Brain Female	brain
6	chr22:31512600-31517800	Weak transcription	Aorta	Aorta
7	chr22:31513800-31515600	Enhancers	Fetal Heart	heart
8	chr22:31514000-31514600	Enhancers	Psoas Muscle	Psoas
9	chr22:31514000-31514800	Enhancers	Left Ventricle	heart
10	chr22:31514000-31515600	Enhancers	Fetal Intestine Large	intestine
11	chr22:31514000-31516600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
12	chr22:31514000-31516600	Enhancers	Fetal Muscle Leg	muscle
13	chr22:31514000-31517000	Enhancers	K562	blood
14	chr22:31514000-31517200	Enhancers	Right Ventricle	heart
15	chr22:31514200-31514800	Enhancers	Skeletal Muscle Male	skeletal muscle
16	chr22:31514200-31515200	Enhancers	HepG2	liver
17	chr22:31514200-31516000	Enhancers	Skeletal Muscle Female	skeletal muscle
18	chr22:31514200-31516600	Enhancers	Right Atrium	heart
19	chr22:31514200-31518400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr22:31514400-31514800	Weak transcription	Fetal Muscle Trunk	muscle
21	chr22:31514400-31515000	Enhancers	Fetal Intestine Small	intestine
22	chr22:31514400-31516800	Enhancers	HSMMtube	muscle
23	chr22:31514400-31517600	Weak transcription	Colonic Mucosa	Colon
24	chr22:31514400-31517600	Weak transcription	Duodenum Mucosa	Duodenum

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