Variant report

Variant	rs73158303
Chromosome Location	chr22:33188158-33188159
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	22:32920308-32927723..22:33186569-33190123	H1-hESC	embryonic stem cell:	embryo
2	chr22:33054648..33057436-chr22:33186906..33189165,2	MCF-7	breast:
3	chr22:33187359..33190243-chr22:33196094..33197933,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000185666	Chromatin interaction
ENSG00000100234	Chromatin interaction

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10483165	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1074421	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11703138	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11704261	0.89[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12157546	0.82[ASN][1000 genomes]
rs12484506	0.94[ASN][1000 genomes]
rs12484696	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12484982	0.82[ASN][1000 genomes]
rs1989438	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2013544	0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5754286	0.81[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs57852281	0.94[ASN][1000 genomes]
rs58237391	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs5994620	0.82[ASN][1000 genomes]
rs5994622	0.94[ASN][1000 genomes]
rs5998614	0.82[ASN][1000 genomes]
rs5998620	0.82[ASN][1000 genomes]
rs5998623	0.82[ASN][1000 genomes]
rs5998624	0.82[ASN][1000 genomes]
rs5998625	0.82[ASN][1000 genomes]
rs5998626	0.94[ASN][1000 genomes]
rs5998627	0.88[ASN][1000 genomes]
rs5998629	0.94[ASN][1000 genomes]
rs6518798	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7286761	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7287602	0.94[ASN][1000 genomes]
rs7287772	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7290713	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7291454	0.94[ASN][1000 genomes]
rs73156468	0.82[ASN][1000 genomes]
rs73156471	0.82[ASN][1000 genomes]
rs73156473	0.94[ASN][1000 genomes]
rs73156475	0.94[ASN][1000 genomes]
rs73156480	0.94[ASN][1000 genomes]
rs73156483	0.94[ASN][1000 genomes]
rs73156485	0.94[ASN][1000 genomes]
rs73156486	0.94[ASN][1000 genomes]
rs73156494	0.94[ASN][1000 genomes]
rs738990	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8136169	0.94[ASN][1000 genomes]
rs8139641	0.94[ASN][1000 genomes]
rs8142064	0.94[ASN][1000 genomes]
rs8142758	0.94[ASN][1000 genomes]
rs9621568	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061384	chr22:33165464-33191811	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33176800-33191200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr22:33176800-33196600	Weak transcription	HUES48 Cell Line	embryonic stem cell
3	chr22:33177400-33192800	Weak transcription	Pancreas	Pancrea
4	chr22:33182000-33192800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr22:33182600-33195400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr22:33185200-33190200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr22:33185200-33190600	Weak transcription	Fetal Muscle Trunk	muscle
8	chr22:33185200-33192600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr22:33185200-33192600	Weak transcription	Right Atrium	heart
10	chr22:33185200-33192800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr22:33185200-33197200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
12	chr22:33185400-33191400	Weak transcription	Right Ventricle	heart
13	chr22:33185600-33189200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr22:33185600-33189800	Weak transcription	Fetal Muscle Leg	muscle
15	chr22:33185600-33189800	Weak transcription	Fetal Stomach	stomach
16	chr22:33185800-33190600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr22:33185800-33192400	Weak transcription	NHDF-Ad	bronchial
18	chr22:33186000-33190000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
19	chr22:33186000-33190600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr22:33186000-33190600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr22:33186000-33190800	Weak transcription	Placenta	Placenta
22	chr22:33186000-33191400	Weak transcription	Adipose Nuclei	Adipose
23	chr22:33186000-33192400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr22:33186000-33192400	Weak transcription	HSMMtube	muscle
25	chr22:33186000-33192600	Weak transcription	HSMM	muscle
26	chr22:33186200-33190600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
27	chr22:33186200-33190800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
28	chr22:33187600-33188800	Weak transcription	HepG2	liver
29	chr22:33187600-33192800	Weak transcription	Rectal Mucosa Donor 31	rectum

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