Variant report

Variant	rs73158352
Chromosome Location	chr22:33242604-33242605
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:33240468..33242609-chr22:33255159..33257901,2	MCF-7	breast:
2	chr22:33012442..33014400-chr22:33241656..33243487,2	K562	blood:

Variant related genes	Relation type
ENSG00000183531	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs55679750	0.87[EUR][1000 genomes]
rs55835648	1.00[EUR][1000 genomes]
rs55873325	1.00[EUR][1000 genomes]
rs56017296	1.00[EUR][1000 genomes]
rs56048132	1.00[EUR][1000 genomes]
rs56214022	1.00[EUR][1000 genomes]
rs56279649	1.00[EUR][1000 genomes]
rs73158332	0.89[EUR][1000 genomes]
rs73158335	1.00[EUR][1000 genomes]
rs73158337	1.00[EUR][1000 genomes]
rs73158341	1.00[EUR][1000 genomes]
rs73158353	1.00[EUR][1000 genomes]
rs73158354	1.00[EUR][1000 genomes]
rs73158355	1.00[EUR][1000 genomes]
rs73158364	1.00[EUR][1000 genomes]
rs73158368	1.00[EUR][1000 genomes]
rs73158370	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv3599	chr22:33230106-33274789	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:78 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:33217800-33248600	Weak transcription	Gastric	stomach
2	chr22:33222600-33258800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr22:33227000-33272400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr22:33227600-33248800	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr22:33227600-33249400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr22:33227800-33252200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
7	chr22:33227800-33253200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr22:33228000-33245000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr22:33228000-33252200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
10	chr22:33228000-33252600	Weak transcription	HUES64 Cell Line	embryonic stem cell
11	chr22:33231200-33245400	Weak transcription	NHLF	lung
12	chr22:33232400-33245600	Weak transcription	HSMMtube	muscle
13	chr22:33235200-33243800	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
14	chr22:33235600-33245200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
15	chr22:33236200-33245600	Weak transcription	Aorta	Aorta
16	chr22:33236200-33253800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr22:33236200-33259000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr22:33236400-33244200	Enhancers	Right Atrium	heart
19	chr22:33237000-33245600	Weak transcription	Fetal Intestine Small	intestine
20	chr22:33237400-33245600	Weak transcription	Fetal Intestine Large	intestine
21	chr22:33237400-33282200	Weak transcription	Fetal Brain Female	brain
22	chr22:33238400-33259200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr22:33238800-33244800	Weak transcription	NH-A	brain
24	chr22:33239000-33245600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
25	chr22:33239000-33246200	Weak transcription	NHDF-Ad	bronchial
26	chr22:33239000-33248800	Weak transcription	Primary hematopoietic stem cells	blood
27	chr22:33239200-33243400	Enhancers	Brain Anterior Caudate	brain
28	chr22:33239200-33248400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
29	chr22:33239600-33243200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
30	chr22:33239600-33245600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
31	chr22:33239800-33245400	Enhancers	Breast Myoepithelial Primary Cells	Breast
32	chr22:33239800-33245400	Weak transcription	Spleen	Spleen
33	chr22:33240200-33245000	Weak transcription	Placenta Amnion	Placenta Amnion
34	chr22:33240200-33245600	Weak transcription	Brain Angular Gyrus	brain
35	chr22:33240800-33244800	Enhancers	Adipose Nuclei	Adipose
36	chr22:33241000-33252800	Weak transcription	H1 Cell Line	embryonic stem cell
37	chr22:33241200-33243400	Enhancers	Brain Substantia Nigra	brain
38	chr22:33241200-33245400	Enhancers	Right Ventricle	heart
39	chr22:33241400-33244800	Enhancers	Skeletal Muscle Male	skeletal muscle
40	chr22:33241400-33251400	Genic enhancers	Fetal Adrenal Gland	Adrenal Gland
41	chr22:33241600-33242800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
42	chr22:33241600-33243400	Enhancers	Brain Hippocampus Middle	brain
43	chr22:33241600-33243400	Enhancers	Esophagus	oesophagus
44	chr22:33241600-33243400	Enhancers	Lung	lung
45	chr22:33241600-33243600	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
46	chr22:33241600-33244000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
47	chr22:33241600-33244000	Enhancers	Brain Inferior Temporal Lobe	brain
48	chr22:33241600-33244000	Enhancers	Fetal Muscle Leg	muscle
49	chr22:33241600-33244000	Enhancers	Psoas Muscle	Psoas
50	chr22:33241600-33244200	Enhancers	HMEC	breast

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