Variant report

Variant	rs73158395
Chromosome Location	chr7:69470556-69470557
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:69423156..69425237-chr7:69469774..69471942,2	MCF-7	breast:

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs56409833	0.92[EUR][1000 genomes]
rs73160103	1.00[EUR][1000 genomes]
rs73168771	1.00[EUR][1000 genomes]
rs73168780	1.00[EUR][1000 genomes]
rs73168794	1.00[EUR][1000 genomes]
rs73170895	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:18 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1021538	chr7:69130236-69575753	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv538917	chr7:69130236-69575753	Enhancers Weak transcription Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv817276	chr7:69130237-69736834	Enhancers Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
4	nsv1018749	chr7:69149029-69995112	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv492242	chr7:69330737-69520566	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1018289	chr7:69383450-69650885	Weak transcription Flanking Active TSS Enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv538922	chr7:69383450-69650885	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv532782	chr7:69383651-70189959	Weak transcription Genic enhancers Enhancers Active TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
9	nsv1034281	chr7:69403828-69548378	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
10	nsv538923	chr7:69403828-69548378	Weak transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv1034182	chr7:69406172-69529294	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv538924	chr7:69406172-69529294	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
13	esv2758119	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
14	esv2759536	chr7:69412504-69594161	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
15	nsv607429	chr7:69430748-69553093	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
16	nsv1028705	chr7:69453983-69524628	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
17	nsv1020488	chr7:69465268-69671126	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
18	esv3359857	chr7:69467266-69470789	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:69460200-69471600	Weak transcription	Fetal Intestine Small	intestine
2	chr7:69461400-69471000	Weak transcription	Right Atrium	heart
3	chr7:69461400-69471400	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr7:69461400-69471600	Weak transcription	Right Ventricle	heart
5	chr7:69461600-69474000	Weak transcription	Psoas Muscle	Psoas
6	chr7:69466400-69471400	Weak transcription	Brain Hippocampus Middle	brain
7	chr7:69466400-69475200	Weak transcription	Left Ventricle	heart
8	chr7:69469400-69470800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr7:69469400-69471000	Enhancers	Thymus	Thymus
10	chr7:69469400-69472000	Enhancers	Primary B cells from peripheral blood	blood
11	chr7:69469600-69472200	Enhancers	Fetal Thymus	thymus
12	chr7:69469800-69471000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:69470000-69470800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr7:69470000-69470800	Enhancers	Primary hematopoietic stem cells	blood
15	chr7:69470000-69470800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
16	chr7:69470000-69471000	Enhancers	Primary T cells from cord blood	blood
17	chr7:69470000-69472000	Flanking Active TSS	Dnd41	blood
18	chr7:69470000-69472200	Enhancers	Fetal Stomach	stomach
19	chr7:69470200-69470800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr7:69470200-69471000	Enhancers	Stomach Smooth Muscle	stomach
21	chr7:69470200-69471200	Enhancers	Duodenum Smooth Muscle	Duodenum
22	chr7:69470200-69471200	Enhancers	Fetal Heart	heart
23	chr7:69470200-69472000	Flanking Active TSS	GM12878-XiMat	blood
24	chr7:69470200-69472200	Enhancers	Colon Smooth Muscle	Colon
25	chr7:69470400-69470800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr7:69470400-69470800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr7:69470400-69471200	Enhancers	Primary B cells from cord blood	blood
28	chr7:69470400-69471400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
29	chr7:69470400-69471800	Enhancers	Fetal Kidney	kidney
30	chr7:69470400-69472000	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr7:69470400-69472000	Enhancers	Fetal Muscle Leg	muscle
32	chr7:69470400-69472400	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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