Variant report

Variant	rs73158514
Chromosome Location	chr3:157171006-157171007
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs55725251	1.00[AMR][1000 genomes];0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2757900	chr3:157090166-157254684	Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Enhancers Active TSS Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases
2	esv2759193	chr3:157090166-157254684	Active TSS Enhancers Strong transcription Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:157159000-157177400	Weak transcription	NH-A	brain
2	chr3:157160400-157195000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:157160600-157176800	Weak transcription	Pancreas	Pancrea
4	chr3:157161200-157186600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:157162400-157177000	Weak transcription	HSMM	muscle
6	chr3:157163800-157177000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
7	chr3:157164600-157185400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:157164800-157176800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
9	chr3:157165200-157177200	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr3:157165800-157174400	Weak transcription	Osteobl	bone
11	chr3:157169400-157171200	Enhancers	Primary monocytes fromperipheralblood	blood
12	chr3:157169600-157171200	Genic enhancers	HUVEC	blood vessel
13	chr3:157170200-157171400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:157170200-157187000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr3:157170400-157171800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:157170600-157172400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr3:157171000-157171600	Enhancers	Monocytes-CD14+_RO01746	blood
18	chr3:157171000-157172200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr3:157171000-157172200	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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