Variant report

Variant	rs73159435
Chromosome Location	chr5:98368531-98368532
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr5:98234770..98237007-chr5:98368052..98370325,2	MCF-7	breast:
2	chr5:98241392..98242207-chr5:98367928..98368798,4	MCF-7	breast:
3	chr5:98362205..98363958-chr5:98366950..98369649,2	MCF-7	breast:
4	chr5:98241190..98242629-chr5:98367641..98368871,16	K562	blood:
5	chr5:97966444..97968012-chr5:98368423..98370387,2	K562	blood:
6	chr5:98240910..98242219-chr5:98367905..98368817,11	MCF-7	breast:
7	chr5:98263067..98265701-chr5:98365532..98368540,4	MCF-7	breast:
8	chr5:98304985..98305640-chr5:98368116..98368862,2	MCF-7	breast:
9	chr5:98261108..98266251-chr5:98365242..98369850,9	K562	blood:

No data

Variant related genes	Relation type
ENSG00000153922	Chromatin interaction
ENSG00000248489	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs73144593	1.00[AMR][1000 genomes]
rs73153527	1.00[AMR][1000 genomes]
rs73153531	1.00[AMR][1000 genomes]
rs73153564	1.00[AMR][1000 genomes]
rs73157634	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:88 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98360200-98369000	Enhancers	Primary B cells from peripheral blood	blood
2	chr5:98363600-98368600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
3	chr5:98364400-98368600	Enhancers	Primary B cells from cord blood	blood
4	chr5:98366200-98369400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr5:98366400-98368600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
6	chr5:98366800-98368600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
7	chr5:98367200-98368600	Enhancers	Primary T killer memory cells from peripheral blood	blood
8	chr5:98367200-98368600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
9	chr5:98367800-98368600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr5:98367800-98368800	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr5:98367800-98368800	Enhancers	Placenta	Placenta
12	chr5:98368000-98368600	Enhancers	Primary T helper naive cells from peripheral blood	blood
13	chr5:98368000-98368600	Enhancers	Primary T helper naive cells fromperipheralblood	blood
14	chr5:98368000-98368800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr5:98368000-98368800	Enhancers	Fetal Kidney	kidney
16	chr5:98368000-98368800	Enhancers	Fetal Thymus	thymus
17	chr5:98368000-98370200	Enhancers	Cortex derived primary cultured neurospheres	brain
18	chr5:98368200-98368600	Enhancers	Primary T helper cells fromperipheralblood	blood
19	chr5:98368200-98368600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
20	chr5:98368200-98368800	Enhancers	Primary T cells fromperipheralblood	blood
21	chr5:98368200-98368800	Enhancers	Fetal Heart	heart
22	chr5:98368200-98368800	Enhancers	Stomach Mucosa	stomach
23	chr5:98368200-98369000	Flanking Active TSS	Liver	Liver
24	chr5:98368200-98369200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
25	chr5:98368200-98369200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr5:98368200-98369800	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
27	chr5:98368200-98369800	Active TSS	Pancreatic Islets	Pancreatic Islet
28	chr5:98368200-98370200	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
29	chr5:98368200-98370400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
30	chr5:98368400-98368600	Enhancers	Primary hematopoietic stem cells short term culture	blood
31	chr5:98368400-98368600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
32	chr5:98368400-98368600	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
33	chr5:98368400-98368600	Active TSS	Hela-S3	cervix
34	chr5:98368400-98368800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
35	chr5:98368400-98368800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr5:98368400-98368800	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
37	chr5:98368400-98368800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
38	chr5:98368400-98368800	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:98368400-98368800	Flanking Active TSS	Brain Angular Gyrus	brain
40	chr5:98368400-98368800	Enhancers	Brain Anterior Caudate	brain
41	chr5:98368400-98368800	Flanking Active TSS	Brain Cingulate Gyrus	brain
42	chr5:98368400-98368800	Flanking Active TSS	Brain Inferior Temporal Lobe	brain
43	chr5:98368400-98368800	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
44	chr5:98368400-98368800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
45	chr5:98368400-98368800	Enhancers	Fetal Intestine Large	intestine
46	chr5:98368400-98368800	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
47	chr5:98368400-98368800	Flanking Active TSS	A549	lung
48	chr5:98368400-98368800	Flanking Active TSS	HSMM	muscle
49	chr5:98368400-98368800	Enhancers	HSMMtube	muscle
50	chr5:98368400-98368800	Enhancers	NHEK	skin

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