Variant report

Variant	rs73159437
Chromosome Location	chr5:98370967-98370968
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr5:98325863..98328194-chr5:98369753..98372423,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs73153536	1.00[AMR][1000 genomes]
rs73153543	1.00[AMR][1000 genomes]
rs73153568	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73153570	1.00[AMR][1000 genomes]
rs73153576	1.00[AMR][1000 genomes]
rs73153582	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73155405	1.00[AMR][1000 genomes]
rs73155440	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1024391	chr5:98355665-98653657	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	nsv599118	chr5:98358191-99029453	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv599119	chr5:98358191-99315677	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr5:98368800-98373200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr5:98369200-98373200	Weak transcription	Colonic Mucosa	Colon
3	chr5:98369400-98372400	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr5:98369400-98373000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
5	chr5:98369600-98371000	Enhancers	HepG2	liver
6	chr5:98369600-98371800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
7	chr5:98369600-98372800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
8	chr5:98369600-98373000	Enhancers	Primary T helper cells PMA-I stimulated	--
9	chr5:98369600-98373000	Weak transcription	Fetal Thymus	thymus
10	chr5:98369600-98373000	Weak transcription	Gastric	stomach
11	chr5:98369600-98373200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr5:98369600-98373200	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr5:98369600-98373400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr5:98369800-98372000	Enhancers	Rectal Mucosa Donor 31	rectum
15	chr5:98370000-98371000	Enhancers	Primary T helper cells fromperipheralblood	blood
16	chr5:98370000-98373000	Weak transcription	Small Intestine	intestine
17	chr5:98370000-98373000	Weak transcription	Thymus	Thymus
18	chr5:98370000-98373000	Weak transcription	GM12878-XiMat	blood
19	chr5:98370200-98373000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr5:98370200-98373400	Weak transcription	Duodenum Mucosa	Duodenum
21	chr5:98370400-98371200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr5:98370400-98371600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
23	chr5:98370400-98371800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
24	chr5:98370400-98372800	Weak transcription	Primary B cells from peripheral blood	blood
25	chr5:98370400-98372800	Weak transcription	Primary T cells from cord blood	blood
26	chr5:98370400-98372800	Weak transcription	Primary T cells fromperipheralblood	blood
27	chr5:98370400-98372800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
28	chr5:98370400-98372800	Weak transcription	Dnd41	blood
29	chr5:98370400-98373000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr5:98370400-98373000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
31	chr5:98370400-98373000	Weak transcription	K562	blood
32	chr5:98370400-98373200	Weak transcription	Rectal Mucosa Donor 29	rectum
33	chr5:98370400-98373200	Weak transcription	Stomach Mucosa	stomach
34	chr5:98370400-98373400	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr5:98370400-98373400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr5:98370400-98373600	Weak transcription	Primary B cells from cord blood	blood
37	chr5:98370600-98371600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
38	chr5:98370800-98371000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
39	chr5:98370800-98371000	Enhancers	Fetal Intestine Large	intestine

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