Variant report
| Variant | rs73160190 |
|---|---|
| Chromosome Location | chr12:73806532-73806533 |
| allele | C/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:13)
| rs_ID | r2[population] |
|---|---|
| rs1356198 | 1.00[ASN][1000 genomes] |
| rs17112157 | 1.00[ASN][1000 genomes] |
| rs17112159 | 1.00[ASN][1000 genomes] |
| rs60175085 | 1.00[ASN][1000 genomes] |
| rs66466126 | 1.00[ASN][1000 genomes] |
| rs66494048 | 1.00[ASN][1000 genomes] |
| rs66813616 | 1.00[ASN][1000 genomes] |
| rs67809872 | 1.00[ASN][1000 genomes] |
| rs73160139 | 1.00[AFR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73160159 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs73168759 | 1.00[ASN][1000 genomes] |
| rs73172921 | 1.00[ASN][1000 genomes] |
| rs998056 | 1.00[AFR][1000 genomes];0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv899274 | chr12:73510254-73875790 | Strong transcription Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 16 gene(s) | inside rSNPs | diseases |
| 2 | nsv899277 | chr12:73773886-73875790 | Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 3 | nsv832457 | chr12:73784588-74011986 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 4 | esv2761749 | chr12:73787836-73818508 | Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription Active TSS | n/a | n/a | inside rSNPs | diseases |
| 5 | nsv1043656 | chr12:73795943-74341905 | Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 6 | nsv541536 | chr12:73795943-74341905 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent Enhancer Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:73806400-73807800 | Weak transcription | hESC Derived CD56+ Ectoderm Cultured Cells | ES cell derived |
