Variant report

Variant	rs73161276
Chromosome Location	chr21:15924261-15924262
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs73161238	1.00[AMR][1000 genomes]
rs73161241	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73161253	1.00[AFR][1000 genomes]
rs73161257	1.00[AFR][1000 genomes]
rs73161259	1.00[AMR][1000 genomes]
rs73161274	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059591	chr21:15835325-15969195	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1056423	chr21:15838309-15948474	Enhancers Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv544376	chr21:15855470-15948474	Weak transcription Active TSS Enhancers Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1065823	chr21:15863224-15948474	Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1057934	chr21:15863224-15969195	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
6	nsv1058533	chr21:15896056-15948474	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	nsv544377	chr21:15896056-15948474	Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
8	nsv834045	chr21:15900678-16112850	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
9	nsv834046	chr21:15903792-16077369	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
10	esv2763685	chr21:15904945-15933282	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv587048	chr21:15908642-15932610	Active TSS Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
12	nsv522627	chr21:15908642-15936503	Enhancers Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr21:15918800-15927000	Weak transcription	Fetal Thymus	thymus
2	chr21:15921400-15924400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
3	chr21:15923000-15924600	Weak transcription	K562	blood
4	chr21:15923000-15927000	Weak transcription	Primary B cells from peripheral blood	blood
5	chr21:15923200-15928200	Weak transcription	HUVEC	blood vessel
6	chr21:15923400-15928000	Weak transcription	Primary B cells from cord blood	blood
7	chr21:15923400-15928200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr21:15923600-15927000	Weak transcription	Primary T cells from cord blood	blood
9	chr21:15923600-15927000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
10	chr21:15923600-15927000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr21:15923600-15927200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
12	chr21:15923600-15927200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
13	chr21:15923600-15927200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
14	chr21:15923600-15927800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
15	chr21:15923800-15926800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr21:15923800-15926800	Weak transcription	Dnd41	blood
17	chr21:15923800-15927000	Weak transcription	Primary T helper cells PMA-I stimulated	--
18	chr21:15923800-15927200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr21:15924200-15924400	Enhancers	Primary T helper cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
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