Variant report

Variant	rs73162454
Chromosome Location	chr3:150035136-150035137
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:18)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:18 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150032815..150035276-chr3:150108966..150110924,2	MCF-7	breast:
2	chr3:150034078..150036042-chr3:150087927..150090147,2	MCF-7	breast:
3	chr3:150033995..150035634-chr3:150139905..150141581,2	MCF-7	breast:
4	chr3:150033630..150035531-chr3:150055443..150057984,2	K562	blood:
5	chr3:150033113..150037399-chr3:150086580..150091176,6	MCF-7	breast:
6	chr3:150016269..150019049-chr3:150033525..150035964,2	K562	blood:
7	chr20:40153235..40155669-chr3:150032514..150035381,2	MCF-7	breast:
8	chr3:150034801..150039393-chr3:150040930..150043727,5	MCF-7	breast:
9	chr3:150028795..150040018-chr3:150059749..150069074,18	MCF-7	breast:
10	chr3:150025051..150027446-chr3:150034118..150036350,3	K562	blood:
11	chr3:150033272..150039330-chr3:150061780..150068166,12	MCF-7	breast:
12	chr3:150020231..150040124-chr3:150123959..150134634,58	MCF-7	breast:
13	chr3:149955631..149959972-chr3:150029866..150036855,6	MCF-7	breast:
14	chr3:150030871..150035431-chr3:150125176..150128492,6	MCF-7	breast:
15	chr3:150029299..150031964-chr3:150033617..150035351,2	MCF-7	breast:
16	chr3:150034469..150037197-chr3:150047170..150048985,3	MCF-7	breast:
17	chr3:150025747..150027446-chr3:150034175..150036350,2	K562	blood:
18	chr3:149956017..149956661-chr3:150035058..150035762,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000244541	Chromatin interaction
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs17492826	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73162480	1.00[AFR][1000 genomes]
rs73163669	1.00[AFR][1000 genomes]
rs73163680	1.00[AFR][1000 genomes]
rs73165711	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150027200-150035200	Weak transcription	NHDF-Ad	bronchial
2	chr3:150028800-150036000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr3:150032600-150035400	Weak transcription	NHLF	lung
4	chr3:150032800-150037000	Weak transcription	Hela-S3	cervix
5	chr3:150033000-150037200	Weak transcription	Osteobl	bone
6	chr3:150033000-150037600	Weak transcription	HUVEC	blood vessel
7	chr3:150033000-150041400	Weak transcription	Placenta	Placenta
8	chr3:150033200-150037600	Weak transcription	Fetal Intestine Small	intestine
9	chr3:150033800-150035600	Enhancers	A549	lung
10	chr3:150033800-150053000	Weak transcription	HUES6 Cell Line	embryonic stem cell
11	chr3:150034000-150035200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
12	chr3:150034000-150035200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr3:150034000-150035200	Weak transcription	Pancreas	Pancrea
14	chr3:150034000-150037200	Weak transcription	Stomach Mucosa	stomach
15	chr3:150034000-150037600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
16	chr3:150034000-150037600	Weak transcription	Fetal Intestine Large	intestine
17	chr3:150034200-150037400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr3:150034200-150037600	Weak transcription	HSMMtube	muscle
19	chr3:150034400-150041600	Weak transcription	Fetal Lung	lung
20	chr3:150034800-150037400	Weak transcription	Rectal Mucosa Donor 31	rectum
21	chr3:150035000-150035800	Enhancers	Liver	Liver
22	chr3:150035000-150036200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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