Variant report

Variant	rs73163037
Chromosome Location	chr2:10531319-10531320
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr2:10260519..10262586-chr2:10530035..10532036,2	MCF-7	breast:
2	chr2:10509476..10512110-chr2:10528927..10531493,3	K562	blood:
3	chr2:10392904..10395765-chr2:10528915..10531340,2	K562	blood:
4	chr2:10531124..10533976-chr2:10546440..10548143,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000272524	Chromatin interaction
ENSG00000171848	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73163041	0.91[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530829	chr2:10357105-10655131	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	57 gene(s)	inside rSNPs	diseases
2	nsv873641	chr2:10480415-10544640	Enhancers Bivalent Enhancer Weak transcription Genic enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv873642	chr2:10491985-10532869	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:97 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10517800-10531400	Enhancers	Lung	lung
2	chr2:10518000-10534800	Enhancers	Stomach Mucosa	stomach
3	chr2:10522400-10531600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
4	chr2:10523000-10541000	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr2:10523200-10531800	Enhancers	Primary T helper cells fromperipheralblood	blood
6	chr2:10523200-10533000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr2:10523200-10534200	Enhancers	Primary T helper cells PMA-I stimulated	--
8	chr2:10523400-10532600	Weak transcription	HUES6 Cell Line	embryonic stem cell
9	chr2:10523400-10534000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
10	chr2:10523400-10534200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
11	chr2:10523400-10537800	Weak transcription	Rectal Smooth Muscle	rectum
12	chr2:10523600-10539000	Weak transcription	Thymus	Thymus
13	chr2:10524800-10536200	Weak transcription	Primary T cells from cord blood	blood
14	chr2:10525600-10532800	Weak transcription	Primary B cells from cord blood	blood
15	chr2:10526600-10531800	Weak transcription	HepG2	liver
16	chr2:10526600-10533400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
17	chr2:10526800-10532800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
18	chr2:10526800-10532800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
19	chr2:10526800-10537400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
20	chr2:10527000-10532800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr2:10527200-10532800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
22	chr2:10527200-10542400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr2:10527400-10531600	Enhancers	Fetal Muscle Leg	muscle
24	chr2:10527600-10531400	Enhancers	K562	blood
25	chr2:10527600-10532800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr2:10527600-10536200	Weak transcription	Fetal Stomach	stomach
27	chr2:10528000-10531400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr2:10528800-10531600	Enhancers	Primary hematopoietic stem cells short term culture	blood
29	chr2:10529000-10531800	Enhancers	Primary monocytes fromperipheralblood	blood
30	chr2:10529000-10533400	Enhancers	Liver	Liver
31	chr2:10529200-10531600	Enhancers	HMEC	breast
32	chr2:10529400-10531400	Enhancers	Colonic Mucosa	Colon
33	chr2:10529400-10531400	Genic enhancers	Fetal Intestine Small	intestine
34	chr2:10529600-10531400	Enhancers	Placenta	Placenta
35	chr2:10529600-10531400	Enhancers	Left Ventricle	heart
36	chr2:10529600-10531400	Enhancers	Spleen	Spleen
37	chr2:10529600-10531400	Enhancers	Osteobl	bone
38	chr2:10529600-10531600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
39	chr2:10529600-10531600	Enhancers	Esophagus	oesophagus
40	chr2:10529600-10531800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
41	chr2:10529800-10531600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr2:10529800-10531600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
43	chr2:10530000-10531400	Enhancers	Primary neutrophils fromperipheralblood	blood
44	chr2:10530000-10540800	Weak transcription	Brain Inferior Temporal Lobe	brain
45	chr2:10530200-10533000	Weak transcription	Brain Germinal Matrix	brain
46	chr2:10530200-10533400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
47	chr2:10530200-10536000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
48	chr2:10530400-10531800	Enhancers	NHEK	skin
49	chr2:10530400-10532400	Weak transcription	Duodenum Mucosa	Duodenum
50	chr2:10530400-10532400	Weak transcription	Stomach Smooth Muscle	stomach

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