Variant report

Variant	rs73163688
Chromosome Location	chr3:150102390-150102391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr3:150101451..150104370-chr3:150105337..150109927,7	K562	blood:
2	chr3:150093950..150095964-chr3:150101199..150103384,2	K562	blood:
3	chr3:150101054..150103942-chr3:150125603..150131015,6	K562	blood:
4	chr3:150100256..150103024-chr3:150133786..150136650,2	K562	blood:
5	chr3:150090383..150092393-chr3:150101374..150104090,2	K562	blood:
6	chr3:150093390..150097610-chr3:150100766..150105118,7	MCF-7	breast:
7	chr3:150101273..150104730-chr3:150121434..150128062,8	K562	blood:
8	chr3:150098184..150100046-chr3:150100500..150103295,2	K562	blood:
9	chr3:150101805..150104730-chr3:150121434..150125041,3	K562	blood:
10	chr3:150101832..150103393-chr3:150130176..150133046,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000196428	Chromatin interaction

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs1012583	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12489388	0.94[ASN][1000 genomes]
rs12493174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59663142	0.85[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829755	chr3:149992023-150156001	Enhancers Weak transcription Transcr. at gene 5' and 3' Genic enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	esv1828464	chr3:150096071-150149868	Enhancers Bivalent/Poised TSS Active TSS Weak transcription Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	47 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:150090200-150124600	Weak transcription	Aorta	Aorta
2	chr3:150090800-150107000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:150090800-150108600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr3:150090800-150111000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr3:150090800-150111000	Weak transcription	NHEK	skin
6	chr3:150094600-150102400	Weak transcription	HUES48 Cell Line	embryonic stem cell
7	chr3:150094600-150102600	Weak transcription	Left Ventricle	heart
8	chr3:150094600-150106200	Weak transcription	HSMM	muscle
9	chr3:150094600-150108800	Weak transcription	NHLF	lung
10	chr3:150094800-150108200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr3:150096000-150105200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:150096200-150108400	Weak transcription	A549	lung
13	chr3:150097600-150102800	Weak transcription	H9 Cell Line	embryonic stem cell
14	chr3:150097600-150103400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
15	chr3:150097800-150102400	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr3:150097800-150102800	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr3:150097800-150111200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:150098000-150102400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
19	chr3:150098000-150102400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
20	chr3:150098000-150102400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
21	chr3:150098000-150102600	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr3:150098000-150102800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr3:150100200-150102600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
24	chr3:150100400-150102600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
25	chr3:150101800-150102400	Enhancers	Primary hematopoietic stem cells	blood
26	chr3:150101800-150102400	Enhancers	Primary hematopoietic stem cells short term culture	blood
27	chr3:150101800-150102400	Enhancers	K562	blood
28	chr3:150102000-150102400	Enhancers	Primary monocytes fromperipheralblood	blood
29	chr3:150102000-150102400	Enhancers	Primary B cells from peripheral blood	blood
30	chr3:150102000-150102400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr3:150102000-150102400	Active TSS	GM12878-XiMat	blood
32	chr3:150102000-150103000	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
33	chr3:150102000-150103600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
34	chr3:150102200-150102400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr3:150102200-150102400	Enhancers	iPS-18 Cell Line	embryonic stem cell
36	chr3:150102200-150102400	Enhancers	Primary T helper cells PMA-I stimulated	--
37	chr3:150102200-150102400	Enhancers	Primary T helper cells fromperipheralblood	blood
38	chr3:150102200-150102400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
39	chr3:150102200-150102400	Flanking Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
40	chr3:150102200-150102400	Enhancers	Fetal Intestine Large	intestine
41	chr3:150102200-150102400	Active TSS	HepG2	liver
42	chr3:150102200-150102600	Enhancers	Primary T cells from cord blood	blood
43	chr3:150102200-150102600	Enhancers	Primary T cells fromperipheralblood	blood
44	chr3:150102200-150102600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
45	chr3:150102200-150102600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
46	chr3:150102200-150102800	Flanking Active TSS	Primary B cells from cord blood	blood
47	chr3:150102200-150102800	Enhancers	Adipose Nuclei	Adipose
48	chr3:150102200-150102800	Enhancers	Fetal Muscle Trunk	muscle
49	chr3:150102200-150102800	Enhancers	Fetal Muscle Leg	muscle
50	chr3:150102200-150103000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood

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