Variant report

Variant	rs73164207
Chromosome Location	chr2:9808195-9808196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs73164230	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv580915	chr2:9308148-9844178	Enhancers Weak transcription Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	70 gene(s)	inside rSNPs	diseases
2	nsv1011802	chr2:9766171-9808284	Enhancers Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	22 gene(s)	inside rSNPs	diseases
3	nsv527083	chr2:9797994-9810648	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:9797800-9808800	Weak transcription	Pancreas	Pancrea
2	chr2:9804600-9810400	Enhancers	Fetal Muscle Leg	muscle
3	chr2:9806800-9808800	Weak transcription	Brain Substantia Nigra	brain
4	chr2:9807000-9808800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr2:9807000-9808800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr2:9807000-9808800	Weak transcription	NHDF-Ad	bronchial
7	chr2:9807000-9808800	Weak transcription	NHLF	lung
8	chr2:9807000-9809000	Weak transcription	NH-A	brain
9	chr2:9807200-9808400	Weak transcription	Fetal Muscle Trunk	muscle
10	chr2:9807200-9808800	Weak transcription	GM12878-XiMat	blood
11	chr2:9807600-9809400	Enhancers	Skeletal Muscle Female	skeletal muscle
12	chr2:9807600-9809600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
13	chr2:9807800-9808200	Flanking Active TSS	Adipose Nuclei	Adipose
14	chr2:9807800-9808800	Weak transcription	Psoas Muscle	Psoas
15	chr2:9807800-9809600	Enhancers	HSMMtube	muscle
16	chr2:9807800-9809800	Enhancers	Skeletal Muscle Male	skeletal muscle
17	chr2:9808000-9808200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr2:9808000-9808200	Enhancers	Muscle Satellite Cultured Cells	--
19	chr2:9808000-9809000	Enhancers	Left Ventricle	heart
20	chr2:9808000-9809000	Enhancers	A549	lung
21	chr2:9808000-9809200	Enhancers	Brain Cingulate Gyrus	brain
22	chr2:9808000-9809400	Enhancers	Brain Angular Gyrus	brain
23	chr2:9808000-9809600	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr2:9808000-9809800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
25	chr2:9808000-9809800	Enhancers	Brain Hippocampus Middle	brain
26	chr2:9808000-9809800	Enhancers	Brain Inferior Temporal Lobe	brain

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