Variant report

Variant	rs73167822
Chromosome Location	chr12:85862851-85862852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:85862041..85863123-chr12:86313866..86314895,4	MCF-7	breast:
2	chr12:85861848..85863045-chr12:86266253..86266913,4	MCF-7	breast:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs4761079	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73167811	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73167835	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs73167859	0.94[AMR][1000 genomes];0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1792335	chr12:85321249-86003609	Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv817242	chr12:85622245-86069213	Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Bivalent/Poised TSS ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
3	nsv1054573	chr12:85658602-86235433	Flanking Active TSS Weak transcription Enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv1035600	chr12:85661373-86235433	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv1053044	chr12:85843030-85942504	Active TSS Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1036617	chr12:85855093-86010549	Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:92 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:85858600-85863000	Enhancers	HMEC	breast
2	chr12:85862200-85863000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr12:85862200-85863200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr12:85862400-85863000	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr12:85862400-85863000	Active TSS	Primary T cells from cord blood	blood
6	chr12:85862400-85863000	Active TSS	Fetal Kidney	kidney
7	chr12:85862400-85863200	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr12:85862400-85863200	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr12:85862400-85863200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
10	chr12:85862400-85863200	Active TSS	iPS-20b Cell Line	embryonic stem cell
11	chr12:85862400-85863200	Active TSS	Monocytes-CD14+_RO01746	blood
12	chr12:85862400-85863400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr12:85862400-85863400	Active TSS	Thymus	Thymus
14	chr12:85862400-85871600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
15	chr12:85862600-85863000	Active TSS	H1 Cell Line	embryonic stem cell
16	chr12:85862600-85863000	Flanking Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:85862600-85863000	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr12:85862600-85863000	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr12:85862600-85863000	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
20	chr12:85862600-85863000	Active TSS	iPS DF 6.9 Cell Line	embryonic stem cell
21	chr12:85862600-85863000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr12:85862600-85863000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr12:85862600-85863000	Flanking Active TSS	Primary hematopoietic stem cells	blood
24	chr12:85862600-85863000	Enhancers	Primary T helper cells fromperipheralblood	blood
25	chr12:85862600-85863000	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr12:85862600-85863000	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr12:85862600-85863000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr12:85862600-85863000	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr12:85862600-85863000	Active TSS	Aorta	Aorta
30	chr12:85862600-85863000	Active TSS	Brain Anterior Caudate	brain
31	chr12:85862600-85863000	Active TSS	Brain Cingulate Gyrus	brain
32	chr12:85862600-85863000	Active TSS	Brain Germinal Matrix	brain
33	chr12:85862600-85863000	Active TSS	Brain Hippocampus Middle	brain
34	chr12:85862600-85863000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
35	chr12:85862600-85863000	Active TSS	Brain Substantia Nigra	brain
36	chr12:85862600-85863000	Active TSS	Colon Smooth Muscle	Colon
37	chr12:85862600-85863000	Active TSS	Duodenum Mucosa	Duodenum
38	chr12:85862600-85863000	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr12:85862600-85863000	Active TSS	Esophagus	oesophagus
40	chr12:85862600-85863000	Active TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr12:85862600-85863000	Active TSS	Fetal Brain Female	brain
42	chr12:85862600-85863000	Active TSS	Fetal Heart	heart
43	chr12:85862600-85863000	Active TSS	Fetal Intestine Large	intestine
44	chr12:85862600-85863000	Active TSS	Fetal Intestine Small	intestine
45	chr12:85862600-85863000	Active TSS	Pancreatic Islets	Pancreatic Islet
46	chr12:85862600-85863000	Active TSS	Fetal Lung	lung
47	chr12:85862600-85863000	Active TSS	Fetal Muscle Trunk	muscle
48	chr12:85862600-85863000	Active TSS	Fetal Muscle Leg	muscle
49	chr12:85862600-85863000	Active TSS	Placenta	Placenta
50	chr12:85862600-85863000	Active TSS	Fetal Stomach	stomach

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