Variant report

Variant	rs73168038
Chromosome Location	chr3:161409329-161409330
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10513569	0.93[AMR][1000 genomes]
rs12489261	0.88[AMR][1000 genomes]
rs12490632	0.93[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs12492378	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12493614	0.93[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs12636658	0.84[AMR][1000 genomes]
rs1606905	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs17424676	0.93[AMR][1000 genomes]
rs17424987	0.88[AMR][1000 genomes]
rs17425527	0.84[AMR][1000 genomes]
rs17490325	0.93[AMR][1000 genomes]
rs4301024	1.00[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55723504	0.93[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs55920876	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs56343804	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57011661	0.84[AMR][1000 genomes]
rs61556020	0.88[AMR][1000 genomes]
rs6779588	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs67876817	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs6800962	1.00[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs73168039	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73168043	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs73168049	0.93[AMR][1000 genomes];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73168065	0.93[AMR][1000 genomes]
rs73168067	0.93[AMR][1000 genomes]
rs73168069	0.93[AMR][1000 genomes]
rs73168081	0.88[AMR][1000 genomes]
rs73168089	0.84[AMR][1000 genomes]
rs73168093	0.84[AMR][1000 genomes]
rs9818597	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9843336	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs9848553	1.00[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9985382	1.00[AMR][1000 genomes];0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1004255	chr3:161340249-161476537	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv515615	chr3:161405094-161563784	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161408400-161409400	Weak transcription	HUES48 Cell Line	embryonic stem cell
2	chr3:161408600-161409400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr3:161409000-161409400	Enhancers	Cortex derived primary cultured neurospheres	brain
4	chr3:161409000-161409600	Enhancers	Brain Germinal Matrix	brain
5	chr3:161409200-161409800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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