Variant report

Variant	rs73169975
Chromosome Location	chr2:10898290-10898291
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr2:10897736..10899489-chr2:10899991..10901678,2	MCF-7	breast:
2	chr2:10897105..10899038-chr2:10904110..10905856,2	MCF-7	breast:
3	chr2:10829111..10831710-chr2:10897862..10901612,3	MCF-7	breast:
4	chr2:10860581..10862851-chr2:10897121..10899089,2	MCF-7	breast:
5	chr2:10897383..10898321-chr2:10917276..10918707,4	MCF-7	breast:
6	chr2:10897911..10900939-chr2:10902372..10905567,4	MCF-7	breast:
7	chr2:10897188..10898301-chr2:11638390..11639400,5	MCF-7	breast:
8	chr2:10863130..10866281-chr2:10896186..10898576,3	MCF-7	breast:

No data

No data

No data

Extended variants
information (count: 22 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11694946	1.00[EUR][1000 genomes]
rs16856528	1.00[AMR][1000 genomes]
rs16856628	1.00[EUR][1000 genomes]
rs34359340	1.00[AMR][1000 genomes]
rs4668698	1.00[EUR][1000 genomes]
rs59189612	1.00[EUR][1000 genomes]
rs59444730	1.00[EUR][1000 genomes]
rs60735401	1.00[EUR][1000 genomes]
rs60810333	1.00[EUR][1000 genomes]
rs61360105	1.00[EUR][1000 genomes]
rs6704981	1.00[AMR][1000 genomes]
rs6716761	1.00[AMR][1000 genomes]
rs6728638	1.00[AMR][1000 genomes]
rs7560564	1.00[EUR][1000 genomes]
rs7570055	1.00[EUR][1000 genomes]
rs7571129	1.00[EUR][1000 genomes]
rs7587282	1.00[AMR][1000 genomes]
rs7599759	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1000953	chr2:10717304-10921805	Strong transcription Enhancers Active TSS Bivalent Enhancer Genic enhancers Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	nsv535584	chr2:10717304-10921805	Bivalent Enhancer Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
3	nsv833381	chr2:10723465-10911284	Strong transcription Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Genic enhancers Enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
4	nsv1000731	chr2:10758657-10943882	Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:10883000-10899400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr2:10892600-10899000	Weak transcription	Fetal Intestine Small	intestine
3	chr2:10892600-10899200	Weak transcription	Duodenum Mucosa	Duodenum
4	chr2:10892600-10905400	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr2:10896000-10899400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr2:10896000-10899600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr2:10896000-10902800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
8	chr2:10897400-10902400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr2:10897600-10898400	Enhancers	Fetal Heart	heart
10	chr2:10897600-10899800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr2:10897800-10906400	Enhancers	Placenta	Placenta
12	chr2:10898000-10899200	Bivalent Enhancer	HepG2	liver
13	chr2:10898000-10899400	Weak transcription	Rectal Mucosa Donor 29	rectum
14	chr2:10898200-10898400	Weak transcription	Esophagus	oesophagus
15	chr2:10898200-10899400	Weak transcription	Rectal Mucosa Donor 31	rectum

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links