Variant report

Variant	rs73170318
Chromosome Location	chr22:32813600-32813601
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr22:32807783..32810463-chr22:32811648..32815260,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000100220	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs11913228	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs11913841	0.92[ASN][1000 genomes]
rs16990376	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2142721	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28418991	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs28630758	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41282595	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41304681	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs41307235	0.85[ASN][1000 genomes]
rs55744002	0.86[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55878163	0.84[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55938437	0.92[ASN][1000 genomes]
rs56101849	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56150811	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56317784	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57570397	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57649686	0.97[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57787050	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58316160	0.85[ASN][1000 genomes]
rs73166368	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73166369	0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73166401	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73168706	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73168710	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs73170319	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73400811	0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs742097	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9609518	0.92[ASN][1000 genomes]
rs9621427	0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9680823	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv459874	chr22:32574274-32866934	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
2	nsv588895	chr22:32574274-32866934	Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
3	nsv1064737	chr22:32603912-32829725	Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1066118	chr22:32779078-32815334	Weak transcription Active TSS Strong transcription Flanking Active TSS Genic enhancers Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
5	nsv1055701	chr22:32806595-32845403	Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr22:32808200-32818000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr22:32808400-32818000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr22:32809000-32814000	Weak transcription	GM12878-XiMat	blood
4	chr22:32809000-32817600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr22:32810200-32817000	Weak transcription	Liver	Liver

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