Variant report

Variant	rs73170487
Chromosome Location	chr13:38488914-38488915
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs1093510	0.82[EUR][1000 genomes]
rs1337085	0.82[EUR][1000 genomes]
rs13378806	0.90[EUR][1000 genomes]
rs17206556	1.00[ASN][1000 genomes]
rs17209704	0.95[EUR][1000 genomes]
rs17210436	0.93[EUR][1000 genomes]
rs17210569	1.00[ASN][1000 genomes]
rs1953688	0.95[EUR][1000 genomes]
rs2068890	0.95[EUR][1000 genomes]
rs2786642	0.82[EUR][1000 genomes]
rs2786643	0.82[EUR][1000 genomes]
rs6563575	0.95[EUR][1000 genomes]
rs73170494	0.95[EUR][1000 genomes]
rs7325031	0.95[EUR][1000 genomes]
rs817735	0.82[EUR][1000 genomes]
rs817736	0.82[EUR][1000 genomes]
rs817737	0.81[EUR][1000 genomes]
rs846414	0.82[EUR][1000 genomes]
rs863661	0.82[EUR][1000 genomes]
rs9315527	0.95[EUR][1000 genomes]
rs961158	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv899996	chr13:38459224-38577056	Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv899997	chr13:38480878-38518459	Flanking Active TSS Active TSS Enhancers Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Genic enhancers	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv899998	chr13:38480878-38582178	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38484200-38494200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:38488200-38489000	Enhancers	H1 Cell Line	embryonic stem cell
3	chr13:38488200-38494200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
4	chr13:38488400-38489200	Weak transcription	H9 Cell Line	embryonic stem cell
5	chr13:38488400-38491000	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr13:38488600-38489600	ZNF genes & repeats	iPS-18 Cell Line	embryonic stem cell
7	chr13:38488800-38489000	Active TSS	iPS-20b Cell Line	embryonic stem cell
8	chr13:38488800-38489200	ZNF genes & repeats	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr13:38488800-38489200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr13:38488800-38489400	ZNF genes & repeats	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr13:38488800-38489800	Enhancers	HMEC	breast
12	chr13:38488800-38489800	ZNF genes & repeats	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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