Variant report

Variant	rs7317121
Chromosome Location	chr13:110382396-110382397
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:110364981..110367185-chr13:110381233..110382839,2	K562	blood:

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12586052	0.90[ASN][1000 genomes]
rs1537029	0.92[ASN][1000 genomes]
rs4773074	0.93[ASN][1000 genomes]
rs7324049	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7491990	0.82[AMR][1000 genomes];0.96[ASN][1000 genomes]
rs920008	0.90[ASN][1000 genomes]
rs9521493	0.92[ASN][1000 genomes]
rs9521494	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9521495	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9521498	0.90[ASN][1000 genomes]
rs9555629	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044855	chr13:110301572-110408608	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
2	nsv826788	chr13:110381750-110469062	Flanking Bivalent TSS/Enh Genic enhancers Enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:110378400-110383000	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr13:110378400-110386200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr13:110378600-110383600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr13:110380400-110382600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:110380600-110382600	Enhancers	Breast Myoepithelial Primary Cells	Breast
6	chr13:110381000-110382400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr13:110381000-110382400	Enhancers	Cortex derived primary cultured neurospheres	brain
8	chr13:110381000-110382400	Enhancers	Placenta Amnion	Placenta Amnion
9	chr13:110381000-110382600	Enhancers	Fetal Thymus	thymus
10	chr13:110381200-110382400	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr13:110381200-110382400	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr13:110381200-110382600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
13	chr13:110381400-110382400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:110381400-110382400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:110381800-110383400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr13:110381800-110383600	Enhancers	Primary hematopoietic stem cells	blood
17	chr13:110381800-110383800	Weak transcription	Fetal Muscle Leg	muscle
18	chr13:110382000-110382400	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
19	chr13:110382000-110382600	Enhancers	HMEC	breast
20	chr13:110382000-110383600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
21	chr13:110382000-110386000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr13:110382200-110382400	Enhancers	HUES64 Cell Line	embryonic stem cell
23	chr13:110382200-110383200	Weak transcription	Ovary	ovary
24	chr13:110382200-110384600	Active TSS	Primary B cells from cord blood	blood
25	chr13:110382200-110384800	Active TSS	Dnd41	blood
26	chr13:110382200-110385400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
27	chr13:110382200-110388800	Weak transcription	Fetal Heart	heart

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