Variant report

Variant	rs73173986
Chromosome Location	chr7:70732516-70732517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11974311	0.86[EUR][1000 genomes]
rs11978503	0.86[EUR][1000 genomes]
rs17522193	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17593748	0.86[EUR][1000 genomes]
rs17594632	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55724524	0.86[EUR][1000 genomes]
rs56344878	0.86[EUR][1000 genomes]
rs58034721	0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs60603252	0.86[EUR][1000 genomes]
rs73173991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73173993	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73176095	1.00[AFR][1000 genomes]
rs73190450	0.81[EUR][1000 genomes]
rs73190455	0.86[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519090	chr7:70085934-71071896	Weak transcription Enhancers Bivalent/Poised TSS Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
2	nsv1015261	chr7:70404302-71255933	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
3	nsv888343	chr7:70641761-70743033	Enhancers Flanking Active TSS Weak transcription Active TSS Genic enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv1033155	chr7:70712368-70757929	Enhancers Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:70729200-70733800	Weak transcription	Left Ventricle	heart
2	chr7:70729400-70736200	Weak transcription	Ovary	ovary
3	chr7:70730800-70734400	Weak transcription	Fetal Lung	lung
4	chr7:70731200-70732600	Enhancers	Colon Smooth Muscle	Colon
5	chr7:70731200-70734400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr7:70731400-70732800	Enhancers	Fetal Heart	heart
7	chr7:70731400-70733400	Enhancers	iPS-18 Cell Line	embryonic stem cell
8	chr7:70731400-70733400	Enhancers	iPS-20b Cell Line	embryonic stem cell
9	chr7:70731600-70733200	Enhancers	ES-I3 Cell Line	embryonic stem cell
10	chr7:70731600-70733400	Enhancers	Placenta Amnion	Placenta Amnion
11	chr7:70731600-70734000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
12	chr7:70731600-70734800	Enhancers	H9 Cell Line	embryonic stem cell
13	chr7:70731800-70733200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr7:70731800-70733200	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr7:70731800-70733400	Enhancers	HUES64 Cell Line	embryonic stem cell
16	chr7:70731800-70733800	Weak transcription	Right Ventricle	heart
17	chr7:70731800-70734400	Enhancers	HUES6 Cell Line	embryonic stem cell
18	chr7:70731800-70734600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr7:70731800-70734600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr7:70732000-70732600	Enhancers	Rectal Smooth Muscle	rectum
21	chr7:70732000-70733200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
22	chr7:70732000-70734600	Weak transcription	Brain Anterior Caudate	brain
23	chr7:70732200-70733000	Weak transcription	Fetal Muscle Leg	muscle
24	chr7:70732400-70733200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr7:70732400-70735600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
26	chr7:70732400-70745400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
27	chr7:70732400-70755400	Weak transcription	Right Atrium	heart

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