Variant report
| Variant | rs73174568 |
|---|---|
| Chromosome Location | chr21:16477025-16477026 |
| allele | C/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr21:16436899..16439316-chr21:16473688..16477461,3 | MCF-7 | breast: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000180530 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:8)
| rs_ID | r2[population] |
|---|---|
| rs2094861 | 0.90[EUR][1000 genomes] |
| rs2823043 | 0.87[EUR][1000 genomes] |
| rs2823048 | 0.90[EUR][1000 genomes] |
| rs2823053 | 0.92[EUR][1000 genomes] |
| rs55699117 | 0.94[EUR][1000 genomes] |
| rs57567605 | 0.84[EUR][1000 genomes] |
| rs73174573 | 0.89[AMR][1000 genomes];0.90[EUR][1000 genomes] |
| rs9977431 | 0.94[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv834048 | chr21:16324481-16489570 | Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 19 gene(s) | inside rSNPs | diseases |
| 2 | nsv521517 | chr21:16474158-16482643 | Enhancers Weak transcription | Chromatin interactive region | 2 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
