Variant report

Variant	rs73175160
Chromosome Location	chr13:40065492-40065493
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12584207	0.90[AFR][1000 genomes];0.97[ASN][1000 genomes]
rs17060071	0.90[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61303672	0.92[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs61355986	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73175166	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs73175169	0.90[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs9315693	0.96[ASN][1000 genomes]
rs9576825	1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9576827	0.90[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9576828	0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2754118	chr13:39347702-40222644	Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	nsv1054600	chr13:39801283-40545027	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	esv2757529	chr13:40040036-40090742	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
4	esv2759933	chr13:40040036-40090742	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	n/a	inside rSNPs	diseases
5	nsv818957	chr13:40063104-40067857	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:40043600-40068200	Weak transcription	Lung	lung
2	chr13:40057000-40070400	Weak transcription	Right Ventricle	heart
3	chr13:40058400-40068200	Weak transcription	Right Atrium	heart
4	chr13:40058600-40070800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
5	chr13:40059000-40073000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr13:40060800-40068200	Weak transcription	Aorta	Aorta
7	chr13:40060800-40071800	Weak transcription	HSMM	muscle
8	chr13:40061600-40081000	Weak transcription	Osteobl	bone
9	chr13:40062400-40068400	Weak transcription	Fetal Muscle Leg	muscle
10	chr13:40062600-40065600	Enhancers	H1 Cell Line	embryonic stem cell
11	chr13:40062600-40068200	Weak transcription	Left Ventricle	heart
12	chr13:40062600-40073000	Weak transcription	Psoas Muscle	Psoas
13	chr13:40063000-40065600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr13:40063400-40066200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
15	chr13:40063800-40065600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr13:40064000-40066400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr13:40064200-40065600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr13:40064200-40065800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr13:40064200-40066000	Enhancers	Fetal Heart	heart
20	chr13:40064600-40065800	Enhancers	H9 Cell Line	embryonic stem cell
21	chr13:40064600-40065800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
22	chr13:40064800-40065800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr13:40064800-40066400	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
24	chr13:40064800-40066600	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr13:40064800-40066800	Enhancers	HUES64 Cell Line	embryonic stem cell
26	chr13:40064800-40081200	Weak transcription	HSMMtube	muscle
27	chr13:40065000-40065600	Enhancers	HUES6 Cell Line	embryonic stem cell
28	chr13:40065000-40066600	Enhancers	HUES48 Cell Line	embryonic stem cell
29	chr13:40065200-40066400	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell
30	chr13:40065200-40068200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
31	chr13:40065400-40065600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
32	chr13:40065400-40065600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
33	chr13:40065400-40065800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
34	chr13:40065400-40068200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr13:40065400-40068200	Weak transcription	Brain Germinal Matrix	brain
36	chr13:40065400-40068200	Weak transcription	Ovary	ovary

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