Variant report

Variant	rs7317537
Chromosome Location	chr13:95313114-95313115
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:95312681..95313521-chr13:95640932..95641462,2	MCF-7	breast:
2	chr13:95305634..95309523-chr13:95312695..95317006,4	K562	blood:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs9516452	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516453	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs9516455	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs9524583	0.92[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[YRI][hapmap];0.85[AFR][1000 genomes];0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34004	chr13:94906537-95392644	Enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv832686	chr13:95206742-95400992	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:95309000-95313200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr13:95309600-95313200	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr13:95309600-95314600	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr13:95309800-95313200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr13:95310000-95318000	Weak transcription	NHEK	skin
6	chr13:95310200-95313200	Weak transcription	NHLF	lung
7	chr13:95311000-95314000	Enhancers	K562	blood
8	chr13:95311200-95313600	Enhancers	HUVEC	blood vessel
9	chr13:95311400-95314600	Enhancers	HUES48 Cell Line	embryonic stem cell
10	chr13:95311800-95313800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
11	chr13:95312000-95313400	Enhancers	Cortex derived primary cultured neurospheres	brain
12	chr13:95312400-95313200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
13	chr13:95312400-95315200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr13:95312400-95315600	Enhancers	H1 Cell Line	embryonic stem cell
15	chr13:95312600-95313200	Enhancers	iPS-20b Cell Line	embryonic stem cell
16	chr13:95312600-95317800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr13:95312800-95313200	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr13:95312800-95313400	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr13:95312800-95315200	Enhancers	iPS-15b Cell Line	embryonic stem cell
20	chr13:95313000-95313200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
21	chr13:95313000-95313200	Flanking Active TSS	Brain Anterior Caudate	brain
22	chr13:95313000-95313200	Active TSS	Brain Hippocampus Middle	brain
23	chr13:95313000-95313800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell

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