Variant report

Variant	rs73175874
Chromosome Location	chr7:103087597-103087598
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:48)
CpG islands
(count:0)
Chromatin interactive
region (count:4)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:48 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr7:103087412-103088284	MCF-7	breast:	n/a	n/a
2	SMC3	chr7:103087380-103088301	SK-N-SH	brain:	n/a	n/a
3	RAD21	chr7:103087204-103088289	SK-N-SH	brain:	n/a	n/a
4	SMC3	chr7:103087544-103088014	K562	blood:	n/a	n/a
5	CTCF	chr7:103087187-103088467	SK-N-SH	brain:	n/a	n/a
6	CTCF	chr7:103087590-103088000	IMR90	lung:	n/a	n/a
7	CTCF	chr7:103087283-103088180	A549	lung:	n/a	n/a
8	RCOR1	chr7:103087562-103087951	K562	blood:	n/a	n/a
9	SMC3	chr7:103087577-103087998	HepG2	liver:	n/a	n/a
10	MAX	chr7:103087467-103087926	K562	blood:	n/a	chr7:103087606-103087615
11	RAD21	chr7:103087561-103087999	IMR90	lung:	n/a	n/a
12	MAX	chr7:103087463-103087879	H1-hESC	embryonic stem cell:	n/a	chr7:103087606-103087615
13	RAD21	chr7:103087500-103088017	HepG2	liver:	n/a	n/a
14	ZNF384	chr7:103087513-103087887	K562	blood:	n/a	n/a
15	E2F6	chr7:103087301-103088040	H1-hESC	embryonic stem cell:	n/a	n/a
16	RAD21	chr7:103087572-103088056	H1-hESC	embryonic stem cell:	n/a	n/a
17	CTCF	chr7:103087591-103087894	SK-N-SH_RA	brain:	n/a	n/a
18	MYC	chr7:103087468-103087969	K562	blood:	n/a	chr7:103087606-103087615
19	RAD21	chr7:103087521-103088030	SK-N-SH_RA	brain:	n/a	n/a
20	RAD21	chr7:103087557-103087975	HepG2	liver:	n/a	n/a
21	RAD21	chr7:103087572-103087958	K562	blood:	n/a	n/a
22	RAD21	chr7:103087577-103087997	HepG2	liver:	n/a	n/a
23	SIN3AK20	chr7:103087409-103088605	MCF-7	breast:	n/a	n/a
24	RAD21	chr7:103087446-103088131	HCT-116	colon:	n/a	n/a
25	CTCF	chr7:103087520-103088041	HCT-116	colon:	n/a	n/a
26	RAD21	chr7:103087513-103088158	ECC-1	luminal epithelium:	n/a	n/a
27	CTCF	chr7:103087560-103087710	A549	lung:	n/a	n/a
28	MAX	chr7:103087397-103087999	H1-hESC	embryonic stem cell:	n/a	chr7:103087606-103087615
29	RAD21	chr7:103087478-103088050	H1-hESC	embryonic stem cell:	n/a	n/a
30	CTCF	chr7:103087562-103088005	GM12878	blood:	n/a	n/a
31	RAD21	chr7:103087589-103087999	Hela-S3	cervix:	n/a	n/a
32	CTCF	chr7:103087501-103088349	MCF-7	breast:	n/a	n/a
33	RAD21	chr7:103087574-103087926	SK-N-SH_RA	brain:	n/a	n/a
34	CTCF	chr7:103087570-103087990	H1-hESC	embryonic stem cell:	n/a	n/a
35	RAD21	chr7:103087553-103087969	H1-hESC	embryonic stem cell:	n/a	n/a
36	CTCF	chr7:103087373-103087995	K562	blood:	n/a	n/a
37	RAD21	chr7:103087502-103088045	HCT-116	colon:	n/a	n/a
38	CTCF	chr7:103087568-103087877	A549	lung:	n/a	n/a
39	SMC3	chr7:103087569-103088008	Hela-S3	cervix:	n/a	n/a
40	CTCF	chr7:103087573-103087909	A549	lung:	n/a	n/a
41	CTCF	chr7:103087500-103087650	NHEK	skin:	n/a	n/a
42	CTCF	chr7:103087521-103087986	HepG2	liver:	n/a	n/a
43	CTCF	chr7:103087505-103088044	MCF-7	breast:	n/a	n/a
44	RAD21	chr7:103087501-103088073	A549	lung:	n/a	n/a
45	HDAC2	chr7:103087463-103088530	MCF-7	breast:	n/a	chr7:103087558-103087572 chr7:103087559-103087573 chr7:103087555-103087569 chr7:103087557-103087571
46	MAX	chr7:103087466-103087876	H1-hESC	embryonic stem cell:	n/a	chr7:103087606-103087615
47	RAD21	chr7:103087577-103088043	A549	lung:	n/a	n/a
48	RAD21	chr7:103087450-103088168	MCF-7	breast:	n/a	n/a

No data

(count:4 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr7:103087468..103088294-chr7:103797372..103797897,2	MCF-7	breast:
2	chr7:102937399..102938316-chr7:103087399..103088236,2	K562	blood:
3	chr7:103087318..103087941-chr7:103205673..103206592,2	MCF-7	breast:
4	chr7:102936543..102939393-chr7:103085608..103089565,4	MCF-7	breast:

No data

Variant related genes	Relation type
SLC26A5	TF binding region
ENSG00000105819	Chromatin interaction

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs17143710	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17281921	1.00[ASN][1000 genomes]
rs2906637	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2906638	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4609135	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55723733	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56091055	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56356144	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs59315577	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59506302	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175865	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs73175869	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73175871	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73175876	0.98[ASN][1000 genomes]
rs73175878	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175881	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175887	0.85[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73175890	1.00[ASN][1000 genomes]
rs7457738	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1030446	chr7:102932689-103221638	Enhancers Flanking Active TSS Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv491911	chr7:102967150-103403622	Flanking Bivalent TSS/Enh Enhancers Weak transcription Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103086400-103088000	Bivalent Enhancer	Primary T helper cells PMA-I stimulated	--
2	chr7:103087000-103087600	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr7:103087000-103087600	Enhancers	Colonic Mucosa	Colon
4	chr7:103087000-103087600	Weak transcription	K562	blood
5	chr7:103087000-103087800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
6	chr7:103087000-103087800	Bivalent Enhancer	Primary T helper cells fromperipheralblood	blood
7	chr7:103087000-103087800	Bivalent Enhancer	Primary T killer naive cells fromperipheralblood	blood
8	chr7:103087000-103087800	Bivalent Enhancer	Brain Cingulate Gyrus	brain
9	chr7:103087000-103087800	Weak transcription	Rectal Mucosa Donor 29	rectum
10	chr7:103087000-103088000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr7:103087000-103088000	Bivalent Enhancer	Primary T cells from cord blood	blood
12	chr7:103087000-103088000	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr7:103087000-103088000	Enhancers	Brain Substantia Nigra	brain
14	chr7:103087000-103088000	Bivalent Enhancer	HepG2	liver
15	chr7:103087000-103088200	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
16	chr7:103087000-103088600	Weak transcription	Right Atrium	heart
17	chr7:103087200-103088200	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
18	chr7:103087200-103088200	Bivalent Enhancer	Primary T helper naive cells fromperipheralblood	blood
19	chr7:103087400-103087600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
20	chr7:103087400-103087600	Bivalent Enhancer	Brain Anterior Caudate	brain
21	chr7:103087400-103087600	Bivalent Enhancer	Brain Hippocampus Middle	brain
22	chr7:103087400-103087800	Bivalent Enhancer	Fetal Muscle Trunk	muscle
23	chr7:103087400-103087800	Bivalent Enhancer	Fetal Thymus	thymus
24	chr7:103087400-103088000	Bivalent Enhancer	Brain Germinal Matrix	brain
25	chr7:103087400-103088200	Enhancers	Gastric	stomach
26	chr7:103087400-103088600	Enhancers	Stomach Mucosa	stomach

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links