Variant report

Variant	rs73176729
Chromosome Location	chr13:38925752-38925753
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr13:38922765..38925249-chr13:38925440..38927480,2	K562	blood:
2	chr13:38924316..38926531-chr13:38938318..38940718,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000120686	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv915901	chr13:38199035-39032633	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv869125	chr13:38550449-39132813	Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv949406	chr13:38561474-39033484	Transcr. at gene 5' and 3' Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
4	nsv561512	chr13:38881318-38930893	Flanking Active TSS Strong transcription Weak transcription Enhancers Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv900005	chr13:38881318-38932949	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv976234	chr13:38924727-38933604	Flanking Active TSS Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Genic enhancers Bivalent/Poised TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv900006	chr13:38924871-38970825	Genic enhancers ZNF genes & repeats Bivalent Enhancer Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:38922600-38926000	Active TSS	Right Atrium	heart
2	chr13:38922800-38926200	Active TSS	Right Ventricle	heart
3	chr13:38923000-38926000	Active TSS	Psoas Muscle	Psoas
4	chr13:38924400-38938800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
5	chr13:38924600-38925800	Flanking Active TSS	Brain Anterior Caudate	brain
6	chr13:38924600-38925800	Flanking Active TSS	Stomach Smooth Muscle	stomach
7	chr13:38924600-38926000	Flanking Active TSS	Brain Germinal Matrix	brain
8	chr13:38924600-38926000	Flanking Active TSS	Colon Smooth Muscle	Colon
9	chr13:38924600-38926000	Flanking Active TSS	Duodenum Mucosa	Duodenum
10	chr13:38924600-38926000	Flanking Active TSS	Fetal Brain Female	brain
11	chr13:38924600-38926200	Flanking Active TSS	Brain Substantia Nigra	brain
12	chr13:38924800-38925800	Enhancers	Small Intestine	intestine
13	chr13:38924800-38925800	Enhancers	Stomach Mucosa	stomach
14	chr13:38924800-38926000	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
15	chr13:38924800-38936400	Weak transcription	Esophagus	oesophagus
16	chr13:38924800-38937000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
17	chr13:38924800-38937200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
18	chr13:38924800-38937400	Weak transcription	Gastric	stomach
19	chr13:38924800-38939000	Weak transcription	Lung	lung
20	chr13:38924800-38939400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr13:38925000-38925800	Enhancers	Primary monocytes fromperipheralblood	blood
22	chr13:38925000-38925800	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr13:38925000-38925800	Enhancers	Thymus	Thymus
24	chr13:38925000-38925800	Flanking Active TSS	HepG2	liver
25	chr13:38925000-38925800	Transcr. at gene 5' and 3'	HMEC	breast
26	chr13:38925000-38926000	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr13:38925000-38926000	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
28	chr13:38925000-38926000	Enhancers	Primary T killer memory cells from peripheral blood	blood
29	chr13:38925000-38926000	Flanking Active TSS	Pancreatic Islets	Pancreatic Islet
30	chr13:38925000-38926000	Transcr. at gene 5' and 3'	Osteobl	bone
31	chr13:38925000-38926200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
32	chr13:38925000-38926200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
33	chr13:38925000-38926200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
34	chr13:38925000-38926200	Transcr. at gene 5' and 3'	NH-A	brain
35	chr13:38925000-38936800	Weak transcription	Aorta	Aorta
36	chr13:38925000-38937400	Weak transcription	H9 Cell Line	embryonic stem cell
37	chr13:38925200-38925800	Genic enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr13:38925200-38925800	Transcr. at gene 5' and 3'	Breast Myoepithelial Primary Cells	Breast
39	chr13:38925200-38925800	Genic enhancers	Primary B cells from peripheral blood	blood
40	chr13:38925200-38925800	Genic enhancers	Fetal Muscle Leg	muscle
41	chr13:38925200-38925800	Enhancers	Fetal Stomach	stomach
42	chr13:38925200-38925800	Enhancers	Spleen	Spleen
43	chr13:38925200-38926000	Transcr. at gene 5' and 3'	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:38925200-38926000	Transcr. at gene 5' and 3'	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
45	chr13:38925200-38926000	Transcr. at gene 5' and 3'	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
46	chr13:38925200-38926000	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
47	chr13:38925200-38926000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
48	chr13:38925200-38926000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr13:38925200-38926000	Enhancers	Liver	Liver
50	chr13:38925200-38926000	Enhancers	Brain Angular Gyrus	brain

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