Variant report
Variant | rs73176768 |
---|---|
Chromosome Location | chr13:39050455-39050456 |
allele | C/T |
Outlinks | Ensembl   UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
No data |
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No data |
rs_ID | r2[population] |
---|---|
rs2875194 | 0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs55808549 | 0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.98[ASN][1000 genomes] |
rs56028802 | 0.92[ASN][1000 genomes] |
rs66947487 | 0.90[EUR][1000 genomes];0.85[ASN][1000 genomes] |
rs67869885 | 0.86[ASN][1000 genomes] |
rs73176766 | 0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.97[ASN][1000 genomes] |
rs73176786 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs73176788 | 0.81[EUR][1000 genomes];0.93[ASN][1000 genomes] |
rs73176791 | 0.80[AMR][1000 genomes];0.81[EUR][1000 genomes];0.92[ASN][1000 genomes] |
rs73180712 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes] |
rs73180714 | 0.82[AMR][1000 genomes];0.81[EUR][1000 genomes];0.86[ASN][1000 genomes] |
rs7318140 | 0.91[ASN][1000 genomes] |

No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
---|---|---|---|---|---|---|---|
1 | nsv869125 | chr13:38550449-39132813 | Enhancers Weak transcription Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 10 gene(s) | inside rSNPs | diseases |
2 | esv1817566 | chr13:39021562-39081413 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
3 | esv1828009 | chr13:39021562-39081413 | Enhancers Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
4 | nsv561513 | chr13:39022191-39060049 | Weak transcription Enhancers | Chromatin interactive region | n/a | inside rSNPs | diseases |
5 | nsv561514 | chr13:39033242-39064286 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
6 | esv1800401 | chr13:39045401-39060049 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
7 | esv1803634 | chr13:39045401-39060049 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
8 | esv1831414 | chr13:39045401-39060049 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
No data |
No. | Chromosome Location | Chromatin state | Cell line | Tissue |
---|---|---|---|---|
1 | chr13:39046200-39061800 | Weak transcription | H1 Derived Mesenchymal Stem Cells | ES cell derived |