Variant report

Variant	rs73177458
Chromosome Location	chr3:105082175-105082176
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11713535	0.87[AFR][1000 genomes]
rs73181374	0.87[AFR][1000 genomes]
rs73183186	0.87[AFR][1000 genomes]
rs73189046	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105073400-105084400	Weak transcription	Aorta	Aorta
2	chr3:105074400-105083600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr3:105074800-105083000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr3:105076200-105083600	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr3:105077400-105082800	Enhancers	Muscle Satellite Cultured Cells	--
6	chr3:105077800-105083800	Enhancers	Osteobl	bone
7	chr3:105077800-105084000	Enhancers	HSMM	muscle
8	chr3:105078000-105083800	Enhancers	NHEK	skin
9	chr3:105078600-105082200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:105078600-105084200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr3:105078600-105084400	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr3:105078600-105084400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
13	chr3:105078600-105084800	Weak transcription	Hela-S3	cervix
14	chr3:105078800-105083000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:105079000-105084000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
16	chr3:105079000-105084400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
17	chr3:105079600-105084000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr3:105079800-105083200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr3:105080400-105082200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr3:105080400-105083400	Enhancers	NH-A	brain
21	chr3:105080400-105084200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:105080600-105082200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:105080600-105083800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr3:105081000-105082200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:105081000-105082800	Enhancers	A549	lung
26	chr3:105081000-105084200	Enhancers	NHLF	lung
27	chr3:105081200-105082200	Enhancers	Primary hematopoietic stem cells	blood
28	chr3:105081200-105082800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
29	chr3:105081200-105084000	Enhancers	HMEC	breast
30	chr3:105081400-105083800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
31	chr3:105081600-105082400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
32	chr3:105081600-105083000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:105081600-105084400	Weak transcription	Primary neutrophils fromperipheralblood	blood
34	chr3:105081800-105084000	Enhancers	HUVEC	blood vessel
35	chr3:105082000-105082800	Weak transcription	NHDF-Ad	bronchial
36	chr3:105082000-105083800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr3:105082000-105084200	Weak transcription	HSMMtube	muscle

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