Variant report

Variant	rs73177924
Chromosome Location	chr12:104309559-104309560
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs10778305	0.98[ASN][1000 genomes]
rs1165668	0.96[ASN][1000 genomes]
rs1165669	0.98[ASN][1000 genomes]
rs1165670	0.98[ASN][1000 genomes]
rs1165674	0.98[ASN][1000 genomes]
rs1165675	0.98[ASN][1000 genomes]
rs1866071	0.98[ASN][1000 genomes]
rs2576954	0.98[ASN][1000 genomes]
rs2576955	0.98[ASN][1000 genomes]
rs2583282	0.98[ASN][1000 genomes]
rs66467677	0.99[ASN][1000 genomes]
rs73177926	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv560039	chr12:104177668-104455340	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	63 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:104306200-104309800	Weak transcription	Aorta	Aorta
2	chr12:104306200-104320800	Weak transcription	Psoas Muscle	Psoas
3	chr12:104306800-104310400	Enhancers	Fetal Muscle Leg	muscle
4	chr12:104308800-104310400	Enhancers	Fetal Thymus	thymus
5	chr12:104309000-104309600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
6	chr12:104309000-104309600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
7	chr12:104309000-104309800	Enhancers	HSMMtube	muscle
8	chr12:104309200-104309600	Enhancers	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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